ORFik: a comprehensive R toolkit for the analysis of translation

ORFik: a comprehensive R toolkit for the analysis of translation

Background: With the rapid growth in the use of high-throughput methods for characterizing translation and the continued expansion of multi-omics, there is a need for back-end functions and streamlined tools for processing, analyzing, and characterizing data produced by these assays. Results: Here,...

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Bibliographic Details
Main Authors: Chyżyńska, K. (Author), Labun, K. (Author), Świrski, M. (Author), Tjeldnes, H. (Author), Torres Cleuren, Y. (Author), Valen, E. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
5' untranslated region
5' Untranslated Regions
5′ UTRs
Analysis workflow
CAGE
Customizable
genetics
high throughput sequencing
High-throughput method
High-Throughput Nucleotide Sequencing
High-throughput sequencing
metabolism
open reading frame
Open reading frame
Open reading frames
Open Reading Frames
Protein Biosynthesis
Protein coding regions
protein synthesis
Proteins
Rapid growth
Ribo-seq
ribosome
Ribosomes
RNA
RNA-seq
TCP-seq
Transcriptomes
Translation
Translation initiation
uORFs
User friendly
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