OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow

OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow

Background: The advent of next generation sequencing has opened new avenues for basic and applied research. One application is the discovery of sequence variants causative of a phenotypic trait or a disease pathology. The computational task of detecting and annotating sequence differences of a targe...

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Bibliographic Details
Main Authors: Bathke, J. (Author), Lühken, G. (Author)
Format: Article
Language:English
Published: BioMed Central Ltd 2021
Subjects:
Automated detection
Basic and applied research
Benchmarking
Computational architecture
Computational methods
Computational processing
Computational resources
Data parallelization
GATK
genome
Genome
high throughput sequencing
High-Throughput Nucleotide Sequencing
High-throughput sequencing
human
Humans
indel
Java
Next generation sequencing
Next-generation sequencing
Open source software
Polymorphism, Single Nucleotide
reproducibility
Reproducibility
Reproducibility of Results
single nucleotide polymorphism
Single nucleotide polymorphisms
SNP
software
Software
Variant calling
workflow
Workflow
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