Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics

by Eric C. Rouchka, Julia H. Chariker, David A. Tieri, Juw Won Park, Shreedharkumar Rajurkar, Vikas Singh, Nishchal K. Verma, Yan Cui, Mark Farman, Bradford Condon, Neil Moore, Jerzy Jaromczyk, Jolanta Jaromczyk, Daniel Harris, Patrick Calie, Eun Kyong Shin, Robert L. Davis, Arash Shaban-Nejad, Joshua M. Mitchell, Robert M. Flight, Qing Jun Wang, Richard M. Higashi, Teresa W-M Fan, Andrew N. Lane, Hunter N. B. Moseley, Liangqun Lu, Bernie J Daigle, Xi Chen, Andrey Smelter, Hunter N. B. Moseley, Jerzy W. Jaromczyk, Mark Farman, Li Chen, Neil Moore, Bailey K. Phan, Nathaniel J. Serpico, Ethan G. Toney, Caroline E. Melton, Jennifer R. Mandel, Bernie J. Daigle, Hao Chen, Kazi I. Zaman, Ramin Homayouni, Patrick J. Trainor, Samantha M. Carlisle, Andrew P. DeFilippis, Shesh N. Rai
Published 2017-10-01

Bioinformatic and Functional Analysis of a Key Determinant Underlying the Substrate Selectivity of the Al Transporter, Nrat1

by Muxue Lu, Guangzhe Yang, Peifang Li, Zhigang Wang, Shan Fu, Xiang Zhang, Xi Chen, Mingxing Shi, Zhenhua Ming, Jixing Xia
Published 2018-05-01

Predicting Target Genes of San-Huang-Chai-Zhu Formula in Treating ANIT-Induced Acute Intrahepatic Cholestasis Rat Model via Bioinformatics Analysis Combined with Experimental Validation

by Jiaming Yao, Junbin Yan, Jinting Wu, Jianshun Yu, Beihui He, Xi Chen, Zhiyun Chen
Published 2021-01-01

MassComp, a lossless compressor for mass spectrometry data

by Ruochen Yang, Xi Chen, Idoia Ochoa
Published 2019-07-01

Effective automated pipeline for 3D reconstruction of synapses based on deep learning

by Chi Xiao, Weifu Li, Hao Deng, Xi Chen, Yang Yang, Qiwei Xie, Hua Han
Published 2018-07-01

CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment

by Xi Chen, Chen Wang, Shanjiang Tang, Ce Yu, Quan Zou
Published 2017-06-01

ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach

by Xi Chen, Xu Shi, Andrew F. Neuwald, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan
Published 2021-04-01

Engineer chimeric Cas9 to expand PAM recognition based on evolutionary information

by Dacheng Ma, Zhimeng Xu, Zhaoyu Zhang, Xi Chen, Xiangzhi Zeng, Yiyang Zhang, Tingyue Deng, Mengfei Ren, Zheng Sun, Rui Jiang, Zhen Xie
Published 2019-02-01

Current and Emerging Biomarkers of Cell Death in Human Disease

by Kongning Li, Deng Wu, Xi Chen, Ting Zhang, Lu Zhang, Ying Yi, Zhengqiang Miao, Nana Jin, Xiaoman Bi, Hongwei Wang, Jianzhen Xu, Dong Wang
Published 2014-01-01

Genome-wide identification and differential analysis of translational initiation

by Peng Zhang, Dandan He, Yi Xu, Jiakai Hou, Bih-Fang Pan, Yunfei Wang, Tao Liu, Christel M. Davis, Erik A. Ehli, Lin Tan, Feng Zhou, Jian Hu, Yonghao Yu, Xi Chen, Tuan M. Nguyen, Jeffrey M. Rosen, David H. Hawke, Zhe Ji, Yiwen Chen
Published 2017-11-01

Systematic functional interrogation of human pseudogenes using CRISPRi

by Ming Sun, Yunfei Wang, Caishang Zheng, Yanjun Wei, Jiakai Hou, Peng Zhang, Wei He, Xiangdong Lv, Yao Ding, Han Liang, Chung-Chau Hon, Xi Chen, Han Xu, Yiwen Chen
Published 2021-08-01

DICE: A Drug Indication Classification and Encyclopedia for AI-Based Indication Extraction

by Arjun Bhatt, Arjun Bhatt, Arjun Bhatt, Ruth Roberts, Ruth Roberts, Xi Chen, Ting Li, Skylar Connor, Qais Hatim, Mike Mikailov, Weida Tong, Zhichao Liu
Published 2021-08-01

Signaling pathway perturbation analysis for assessment of biological impact of cigarette smoke on lung cells

by Hongyu Chen, Xi Chen, Yifei Shen, Xinxin Yin, Fangjie Liu, Lu Liu, Jie Yao, Qinjie Chu, Yaqin Wang, Hongyan Qi, Michael P. Timko, Weijia Fang, Longjiang Fan
Published 2021-08-01

Genome-wide identification of oil biosynthesis-related long non-coding RNAs in allopolyploid Brassica napus

by Enhui Shen, Xintian Zhu, Shuijin Hua, Hongyu Chen, Chuyu Ye, Longhua Zhou, Qing Liu, Qian-Hao Zhu, Longjiang Fan, Xi Chen
Published 2018-10-01

DC3 is a method for deconvolution and coupled clustering from bulk and single-cell genomics data

by Wanwen Zeng, Xi Chen, Zhana Duren, Yong Wang, Rui Jiang, Wing Hung Wong
Published 2019-10-01

Comprehensive characterization of circular RNAs in ~ 1000 human cancer cell lines

by Hang Ruan, Yu Xiang, Junsuk Ko, Shengli Li, Ying Jing, Xiaoyu Zhu, Youqiong Ye, Zhao Zhang, Tingting Mills, Jing Feng, Chun-Jie Liu, Ji Jing, Jin Cao, Bingying Zhou, Li Wang, Yubin Zhou, Chunru Lin, An-Yuan Guo, Xi Chen, Lixia Diao, Wenbo Li, Zhiao Chen, Xianghuo He, Gordon B. Mills, Michael R. Blackburn, Leng Han
Published 2019-08-01

Unraveling Gene Fusions for Drug Repositioning in High-Risk Neuroblastoma

by Zhichao Liu, Xi Chen, Ruth Roberts, Ruth Roberts, Ruili Huang, Mike Mikailov, Weida Tong
Published 2021-04-01

Tumors induce de novo steroid biosynthesis in T cells to evade immunity

by Bidesh Mahata, Jhuma Pramanik, Louise van der Weyden, Krzysztof Polanski, Gozde Kar, Angela Riedel, Xi Chen, Nuno A. Fonseca, Kousik Kundu, Lia S. Campos, Edward Ryder, Graham Duddy, Izabela Walczak, Klaus Okkenhaug, David J. Adams, Jacqueline D. Shields, Sarah A. Teichmann
Published 2020-07-01

Function of low ADARB1 expression in lung adenocarcinoma.

by Xiang Wang, Zhijie Xu, Xinxin Ren, Xi Chen, Jie Wei, Wei Lin, Zhi Li, Chunlin Ou, Zhicheng Gong, Yuanliang Yan
Published 2019-01-01

Identification of Aloperine as an anti-apoptotic Bcl2 protein inhibitor in glioma cells

by Zhijie Xu, Xiang Wang, Xi Chen, Shuangshuang Zeng, Long Qian, Jie Wei, Zhicheng Gong, Yuanliang Yan
Published 2019-09-01