Indian genetic heritage in Southeast Asian populations

by Altınışık, N.E, Boonthai, W., Changmai, P., Flegontov, P., Flegontova, O., Inta, A., Jaisamut, K., Kampuansai, J., Kutanan, W., Pamjav, H., Reich, D., Yüncü, E.
Published 2022

A systems genomics approach uncovers molecular associates of RSV severity

by Benoodt, L., Caserta, M.T, Chu, C.-Y, Corbett, A., Falsey, A.R, Gill, S.R, Grier, A., Holden-Wiltse, J., Mariani, T.J, McCall, M.N, Qiu, X., Slaunwhite, C., Thakar, J., Topham, D.J, Walsh, E.E, Wang, L.
Published 2021

Modeling CRISPR gene drives for suppression of invasive rodents using a supervised machine learning framework

by Champer, J., Champer, S.E, García-Díaz, P., Messer, P.W, Oakes, N., Sharma, R.
Published 2021

Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?

by Diaz-Colunga, J., Diaz-Uriarte, R.
Published 2021

GCAEMDA: Predicting miRNA-disease associations via graph convolutional autoencoder

by Ji, C.-M, Li, L., Ni, J.-C, Su, Y.-S, Wang, Y.-T, Zheng, C.-H
Published 2021

A proposed workflow for proactive virus surveillance and prediction of variants for vaccine design

by Baker, J.J, Mathy, C.J.P, Schaletzky, J.
Published 2021

CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

by Eroglu, A., Khetan, S., Stitzel, M.L, Tewhey, R., Thibodeau, A., Ucar, D.
Published 2021

Development of an experiment-split method for benchmarking the generalization of a PTM site predictor: Lysine methylome as an example

by Li, L., Ma, C., Zhao, J., Zou, G., Zou, Y.
Published 2021

Statistical tests for intra-tumour clonal co-occurrence and exclusivity

by Beerenwinkel, N., Beisel, C., Futreal, P.A, Jahn, K., Kuipers, J., Moch, H., Moore, A.L, Morita, K., Schraml, P., Takahashi, K., Wang, F.
Published 2021

Extracting multi-way chromatin contacts from Hi-C data

by Hyeon, C., Liu, L., Zhang, B.
Published 2021

CStone: A de novo transcriptome assembler for short-read data that identifies nonchimeric contigs based on underlying graph structure

by Archer, J., Linheiro, R.
Published 2021

Computational redesign of a fluorogen activating protein with Rosetta

by Baranov, M.S, Bender, B.J, Bozhanova, N.G, Gavrikov, A.S, Gorbachev, D.A, Harp, J.M, Lukyanov, K.A, Meiler, J., Mercado, C.B, Mishin, A.S, Zhang, X.
Published 2021

Inferred expression regulator activities suggest genes mediating cardiometabolic genetic signals

by Amundadottir, L.T, Chung, C.C, Collins, I., Connelly, K., Hoskins, J.W, O'Brien, A., Shi, J., Zhong, J.
Published 2021

MitoScape: A big-data, machine-learning platform for obtaining mitochondrial DNA from next-generation sequencing data

by Acheampong, P., Anderson, S.A, Arany, Z., Center, R.G, Damrauer, S.M, Emanuel, B.S, Ennis, B., Li, J., Loneragan, B., Potluri, P., Rader, D.J, Resnick, A.C, Sanchez, M.I.G.L, Singh, L.N, Tran, O., Trounce, I.A, Tsao, N.L, Wallace, D.C, Zhu, Y.
Published 2021

Optimizing network propagation for multi-omics data integration

by Beyer, A., Charmpi, K., Chokkalingam, M., Johnen, R.
Published 2021

TwinCons: Conservation score for uncovering deep sequence similarity and divergence

by Alvarez-Carreño, C., Penev, P.I, Petrov, A.S, Smith, E., Williams, L.D
Published 2021

NanoMethViz: An R/Bioconductor package for visualizing long-read methylation data

by Blewitt, M.E, Cook, D., Gouil, Q., Hickey, P.F, Ritchie, M.E, Su, S.
Published 2021

Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO)

by Ades, S., Aleksander, S.A, Bennett, J.A, Berardini, T.Z, Brady, S., Britton, R., Carbon, S., Caruso, S.M, Clements, D., Dalia, R., Defelice, M., Doyle, E.L, Erill, I., Farrar, S., Friedberg, I., Gill, J.J, Gurney, S.M.R, Hu, J.C, Hughes, L., Johnson, A., Kowalski, J.M, LaBonte, S., Li, D., Liles, N., Lovering, R.C, Mans, T.L, McCarthy, F., McIntosh, B., Moore, S.D, Murphy, R., Paustian, T.D, Perdue, S., Peterson, C.N, Prüß, B.M, Ramsey, J., Renfro, D., Ross, C., Saha, M.S, Sheehy, R.R, Siegele, D.A, Tansey, J.T, Temple, L., Thorman, A.W, Trevino, S., Vollmer, A.C, Walbot, V., Willey, J., Zweifel, A.E
Published 2021

Evidence from simulation studies for selective constraints on the codon usage of the Angiosperm psbA gene

by Ashok, T., Barrett, J., Kalkus, A., Morton, B.R
Published 2021

Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits

by Burch, K.S, Hou, K., Johnson, R., Paciuc, M., Pasaniuc, B., Sankararaman, S.
Published 2021