Meeting report of the fourth annual Tri-Service Microbiome Consortium symposium

by Michael S. Goodson, Robyn A. Barbato, J. Philip Karl, Karl Indest, Nancy Kelley-Loughnane, Robert Kokoska, Camilla Mauzy, Kenneth Racicot, Vanessa Varaljay, Jason Soares
Published 2021-08-01

Changes in the root-associated bacteria of sorghum are driven by the combined effects of salt and sorghum development

by Gao Yukun, Cui Jianghui, Ren Genzeng, Wei Shilin, Yang Puyuan, Yin Congpei, Liang Hongkai, Chang Jinhua
Published 2021-08-01

Archaeal and bacterial communities assembly and co-occurrence networks in subtropical mangrove sediments under Spartina alterniflora invasion

by Weidong Chen, Donghui Wen
Published 2021-05-01

Unravelling the effects of tropical land use conversion on the soil microbiome

by Dirk Berkelmann, Dominik Schneider, Anja Meryandini, Rolf Daniel
Published 2020-02-01

Genome sequence analysis of the beneficial Bacillus subtilis PTA-271 isolated from a Vitis vinifera (cv. Chardonnay) rhizospheric soil: assets for sustainable biocontrol

by Catarina Leal, Florence Fontaine, Aziz Aziz, Conceiçao Egas, Christophe Clément, Patricia Trotel-Aziz
Published 2021-01-01

Facilitation in the soil microbiome does not necessarily lead to niche expansion

by Xue Zhou, Márcio F. A. Leite, Zhenqing Zhang, Lei Tian, Jingjing Chang, Lina Ma, Xiujun Li, Johannes A. van Veen, Chunjie Tian, Eiko E. Kuramae
Published 2021-02-01

Plastics and the microbiome: impacts and solutions

by G. Lear, J. M. Kingsbury, S. Franchini, V. Gambarini, S. D. M. Maday, J. A. Wallbank, L. Weaver, O. Pantos
Published 2021-01-01

Characterization of the microbiome associated with in situ earthen materials

by Alexis Simons, Alexandra Bertron, Jean-Emmanuel Aubert, Christophe Roux, Christine Roques
Published 2020-01-01

Shotgun metagenomic analysis of microbial communities from the Loxahatchee nature preserve in the Florida Everglades

by Briana S. Abraham, Deniz Caglayan, Natalie V. Carrillo, Matthew C. Chapman, Claire T. Hagan, Skye T. Hansen, Ralph O. Jeanty, Alexander A. Klimczak, Marcos J. Klingler, Thomas P. Kutcher, Sydney H. Levy, Angel A. Millard-Bruzos, Thomas B. Moore, David J. Prentice, Matthew E. Prescott, Richard Roehm, Jordan A. Rose, Mulan Yin, Ayumi Hyodo, Kathleen Lail, Christopher Daum, Alicia Clum, Alex Copeland, Rekha Seshadri, Tijana Glavina del Rio, Emiley A. Eloe-Fadrosh, Jonathan B. Benskin
Published 2020-01-01

Microbial community dynamics and coexistence in a sulfide-driven phototrophic bloom

by Srijak Bhatnagar, Elise S. Cowley, Sebastian H. Kopf, Sherlynette Pérez Castro, Sean Kearney, Scott C. Dawson, Kurt Hanselmann, S. Emil Ruff
Published 2020-01-01

Performance evaluation of a new custom, multi-component DNA isolation method optimized for use in shotgun metagenomic sequencing-based aerosol microbiome research

by Kari Oline Bøifot, Jostein Gohli, Line Victoria Moen, Marius Dybwad
Published 2020-01-01

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

by H. Soon Gweon, Liam P. Shaw, Jeremy Swann, Nicola De Maio, Manal AbuOun, Rene Niehus, Alasdair T. M. Hubbard, Mike J. Bowes, Mark J. Bailey, Tim E. A. Peto, Sarah J. Hoosdally, A. Sarah Walker, Robert P. Sebra, Derrick W. Crook, Muna F. Anjum, Daniel S. Read, Nicole Stoesser, on behalf of the REHAB consortium
Published 2019-10-01

Genome sequence of Epibacterium ulvae strain DSM 24752T, an indigoidine-producing, macroalga-associated member of the marine Roseobacter group

by Sven Breider, Shama Sehar, Martine Berger, Torsten Thomas, Thorsten Brinkhoff, Suhelen Egan
Published 2019-08-01

Seasonal dynamics in taxonomy and function within bacterial and viral metagenomic assemblages recovered from a freshwater agricultural pond

by Jessica Chopyk, Daniel J. Nasko, Sarah Allard, Anthony Bui, Mihai Pop, Emmanuel F. Mongodin, Amy R. Sapkota
Published 2020-10-01

BLAST-QC: automated analysis of BLAST results

by Behzad Torkian, Spencer Hann, Eva Preisner, R. Sean Norman
Published 2020-08-01

Falling bacterial communities from the atmosphere

by Cheolwoon Woo, Naomichi Yamamoto
Published 2020-12-01

The distribution of microbiomes and resistomes across farm environments in conventional and organic dairy herds in Pennsylvania

by Dipti W. Pitta, Nagaraju Indugu, John D. Toth, Joseph S. Bender, Linda D. Baker, Meagan L. Hennessy, Bonnie Vecchiarelli, Helen Aceto, Zhengxia Dou
Published 2020-12-01

A rather dry subject; investigating the study of arid-associated microbial communities

by Peter Osborne, Lindsay J. Hall, Noga Kronfeld-Schor, David Thybert, Wilfried Haerty
Published 2020-12-01

Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apple plantlets grown in soils affected by replant disease

by Viviane Radl, Jana Barbro Winkler, Susanne Kublik, Luhua Yang, Traud Winkelmann, Gisle Vestergaard, Peter Schröder, Michael Schloter
Published 2019-11-01

Correction to: Reduced microbial potential for the degradation of phenolic compounds in the rhizosphere of apple plantlets grown in soils affected by replant disease

by Viviane Radl, Jana Barbro Winkler, Susanne Kublik, Luhua Yang, Traud Winkelmann, Gisle Vestergaard, Peter Schröder, Michael Schloter
Published 2019-12-01