PREDICTION OF PROTEIN FUNCTION USING TEXT FEATURES EXTRACTED FROM THE BIOMEDICAL LITERATURE

by Wong, ANDREW
Published 2013

ProLanGO: Protein Function Prediction Using Neural Machine Translation Based on a Recurrent Neural Network

by Renzhi Cao, Colton Freitas, Leong Chan, Miao Sun, Haiqing Jiang, Zhangxin Chen
Published 2017-10-01

Machine learning for discovering missing or wrong protein function annotations

by Felipe Kenji Nakano, Mathias Lietaert, Celine Vens
Published 2019-09-01

Protein Function Prediction Using Function Associations in Protein–Protein Interaction Network

by Pingping Sun, Xian Tan, Sijia Guo, Jingbo Zhang, Bojian Sun, Ning Du, Han Wang, Hui Sun
Published 2018-01-01

Combining learning and constraints for genome-wide protein annotation

by Stefano Teso, Luca Masera, Michelangelo Diligenti, Andrea Passerini
Published 2019-06-01

Evaluating the impact of topological protein features on the negative examples selection

by Paolo Boldi, Marco Frasca, Dario Malchiodi
Published 2018-11-01

Biochemical functional predictions for protein structures of unknown or uncertain function

by Caitlyn L. Mills, Penny J. Beuning, Mary Jo Ondrechen
Published 2015-01-01

Non-classical 11β-hydroxylase deficiency caused by compound heterozygous mutations: a case study and literature review

by Dongdong Wang, Jiahui Wang, Tong Tong, Qing Yang
Published 2018-09-01

基於資料科學方法之巨量蛋白質功能預測

by 劉義瑋, Liu, Yi-Wei

Pattern Oriented Methods for Inferring Protein Annotations within Protein Interaction Networks

by Kirac, Mustafa
Published 2009

GODoc: high-throughput protein function prediction using novel k-nearest-neighbor and voting algorithms

by Yi-Wei Liu, Tz-Wei Hsu, Che-Yu Chang, Wen-Hung Liao, Jia-Ming Chang
Published 2020-11-01

The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

by Naihui Zhou, Yuxiang Jiang, Timothy R. Bergquist, Alexandra J. Lee, Balint Z. Kacsoh, Alex W. Crocker, Kimberley A. Lewis, George Georghiou, Huy N. Nguyen, Md Nafiz Hamid, Larry Davis, Tunca Dogan, Volkan Atalay, Ahmet S. Rifaioglu, Alperen Dalkıran, Rengul Cetin Atalay, Chengxin Zhang, Rebecca L. Hurto, Peter L. Freddolino, Yang Zhang, Prajwal Bhat, Fran Supek, José M. Fernández, Branislava Gemovic, Vladimir R. Perovic, Radoslav S. Davidović, Neven Sumonja, Nevena Veljkovic, Ehsaneddin Asgari, Mohammad R.K. Mofrad, Giuseppe Profiti, Castrense Savojardo, Pier Luigi Martelli, Rita Casadio, Florian Boecker, Heiko Schoof, Indika Kahanda, Natalie Thurlby, Alice C. McHardy, Alexandre Renaux, Rabie Saidi, Julian Gough, Alex A. Freitas, Magdalena Antczak, Fabio Fabris, Mark N. Wass, Jie Hou, Jianlin Cheng, Zheng Wang, Alfonso E. Romero, Alberto Paccanaro, Haixuan Yang, Tatyana Goldberg, Chenguang Zhao, Liisa Holm, Petri Törönen, Alan J. Medlar, Elaine Zosa, Itamar Borukhov, Ilya Novikov, Angela Wilkins, Olivier Lichtarge, Po-Han Chi, Wei-Cheng Tseng, Michal Linial, Peter W. Rose, Christophe Dessimoz, Vedrana Vidulin, Saso Dzeroski, Ian Sillitoe, Sayoni Das, Jonathan Gill Lees, David T. Jones, Cen Wan, Domenico Cozzetto, Rui Fa, Mateo Torres, Alex Warwick Vesztrocy, Jose Manuel Rodriguez, Michael L. Tress, Marco Frasca, Marco Notaro, Giuliano Grossi, Alessandro Petrini, Matteo Re, Giorgio Valentini, Marco Mesiti, Daniel B. Roche, Jonas Reeb, David W. Ritchie, Sabeur Aridhi, Seyed Ziaeddin Alborzi, Marie-Dominique Devignes, Da Chen Emily Koo, Richard Bonneau, Vladimir Gligorijević, Meet Barot, Hai Fang, Stefano Toppo, Enrico Lavezzo, Marco Falda, Michele Berselli, Silvio C.E. Tosatto, Marco Carraro, Damiano Piovesan, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Slobodan Vucetic, Gage S. Black, Dane Jo, Erica Suh, Jonathan B. Dayton, Dallas J. Larsen, Ashton R. Omdahl, Liam J. McGuffin, Danielle A. Brackenridge, Patricia C. Babbitt, Jeffrey M. Yunes, Paolo Fontana, Feng Zhang, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Caleb Chandler, Miguel Amezola, Devon Johnson, Jia-Ming Chang, Wen-Hung Liao, Yi-Wei Liu, Stefano Pascarelli, Yotam Frank, Robert Hoehndorf, Maxat Kulmanov, Imane Boudellioua, Gianfranco Politano, Stefano Di Carlo, Alfredo Benso, Kai Hakala, Filip Ginter, Farrokh Mehryary, Suwisa Kaewphan, Jari Björne, Hans Moen, Martti E.E. Tolvanen, Tapio Salakoski, Daisuke Kihara, Aashish Jain, Tomislav Šmuc, Adrian Altenhoff, Asa Ben-Hur, Burkhard Rost, Steven E. Brenner, Christine A. Orengo, Constance J. Jeffery, Giovanni Bosco, Deborah A. Hogan, Maria J. Martin, Claire O’Donovan, Sean D. Mooney, Casey S. Greene, Predrag Radivojac, Iddo Friedberg
Published 2019-11-01

To Embed or Not: Network Embedding as a Paradigm in Computational Biology

by Walter Nelson, Walter Nelson, Marinka Zitnik, Bo Wang, Bo Wang, Bo Wang, Jure Leskovec, Jure Leskovec, Anna Goldenberg, Anna Goldenberg, Anna Goldenberg, Roded Sharan
Published 2019-05-01

Uncovering Biological Network Function via Graphlet Degree Signatures

by Nataša Pržulj, Tijana Milenković
Published 2008-01-01

Redundancy-aware learning of protein structure-function relationships

by Bryant, Drew
Published 2013

IN SILICO ANALYSIS OF PHAG-LIKE PROTEIN IN RALSTONIA EUTROPHA H16, POTENTIALLY INVOLVED IN POLYHYDROXYALKANOATES SYNTHESIS

by Melissa Uribe Acosta, Andrés Felipe Villa Restrepo
Published 2019-12-01

Assessing the Performances of Protein Function Prediction Algorithms from the Perspectives of Identification Accuracy and False Discovery Rate

by Chun Yan Yu, Xiao Xu Li, Hong Yang, Ying Hong Li, Wei Wei Xue, Yu Zong Chen, Lin Tao, Feng Zhu
Published 2018-01-01

Protein function prediction with gene ontology: from traditional to deep learning models

by Thi Thuy Duong Vu, Jaehee Jung
Published 2021-08-01

Protein Function Prediction Using Decision Tree Technique

by Yedida, Venkata Rama Kumar Swamy
Published 2008

In Silico Characterization of Meloidogyne Genus Nematode Cellulose Binding Proteins

by Alana Manoela Fraga Menezes, Edilton de Albuquerque Cavalcanti Junior, Luiza Suely Semen Martins, Rômulo Maciel de Moraes Filho
Published 2019-05-01