First Draft Genome Sequence of the Pathogenic Fungus Lomentospora prolificans (Formerly Scedosporium prolificans)

by Ruibang Luo, Aleksey Zimin, Rachael Workman, Yunfan Fan, Geo Pertea, Nina Grossman, Maggie P. Wear, Bei Jia, Heather Miller, Arturo Casadevall, Winston Timp, Sean X. Zhang, Steven L. Salzberg
Published 2017-11-01

An implementation science approach to evaluating pathogen whole genome sequencing in public health

by Angeline S. Ferdinand, Margaret Kelaher, Courtney R. Lane, Anders Gonçalves da Silva, Norelle L. Sherry, Susan A. Ballard, Patiyan Andersson, Tuyet Hoang, Justin T. Denholm, Marion Easton, Benjamin P. Howden, Deborah A. Williamson
Published 2021-07-01

Evaluation of the added value of viral genomic information for predicting severity of influenza infection

by Nina Van Goethem, Annie Robert, Nathalie Bossuyt, Laura A. E. Van Poelvoorde, Sophie Quoilin, Sigrid C. J. De Keersmaecker, Brecht Devleesschauwer, Isabelle Thomas, Kevin Vanneste, Nancy H. C. Roosens, Herman Van Oyen
Published 2021-08-01

Severe infections emerge from commensal bacteria by adaptive evolution

by Bernadette C Young, Chieh-Hsi Wu, N Claire Gordon, Kevin Cole, James R Price, Elian Liu, Anna E Sheppard, Sanuki Perera, Jane Charlesworth, Tanya Golubchik, Zamin Iqbal, Rory Bowden, Ruth C Massey, John Paul, Derrick W Crook, Timothy E Peto, A Sarah Walker, Martin J Llewelyn, David H Wyllie, Daniel J Wilson
Published 2017-12-01

The Human Genome Organisation (HUGO) and the 2020 COVID-19 pandemic

by Benjamin Capps, Yann Joly, John Mulvihill, Won Bok Lee, HUGO Committee on Ethics, Law and Society, and the HUGO Council
Published 2021-02-01

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

by Kirsten I Bos, Alexander Herbig, Jason Sahl, Nicholas Waglechner, Mathieu Fourment, Stephen A Forrest, Jennifer Klunk, Verena J Schuenemann, Debi Poinar, Melanie Kuch, G Brian Golding, Olivier Dutour, Paul Keim, David M Wagner, Edward C Holmes, Johannes Krause, Hendrik N Poinar
Published 2016-01-01

Centralised or Localised Pathogen Whole Genome Sequencing: Lessons Learnt From Implementation in a Clinical Diagnostic Laboratory

by Alicia G. Beukers, Frances Jenkins, Sebastiaan J. van Hal, Sebastiaan J. van Hal
Published 2021-05-01

Transmission dynamics and control of multidrug-resistant Klebsiella pneumoniae in neonates in a developing country

by Thomas Crellen, Paul Turner, Sreymom Pol, Stephen Baker, To Nguyen Thi Nguyen, Nicole Stoesser, Nicholas PJ Day, Claudia Turner, Ben S Cooper
Published 2019-12-01

Perceived utility and feasibility of pathogen genomics for public health practice: a survey among public health professionals working in the field of infectious diseases, Belgium,...

by N. Van Goethem, M. J. Struelens, S. C. J. De Keersmaecker, N. H. C. Roosens, A. Robert, S. Quoilin, H. Van Oyen, B. Devleesschauwer
Published 2020-08-01

Next Generation Sequencing and Bioinformatics-driven Clinical Metagenomics Applications

by Guan, Qingtian
Published 2020

Correcting for Population Stratification Reduces False Positive and False Negative Results in Joint Analyses of Host and Pathogen Genomes

by Olivier Naret, Olivier Naret, Nimisha Chaturvedi, Nimisha Chaturvedi, Istvan Bartha, Istvan Bartha, Christian Hammer, Christian Hammer, Jacques Fellay, Jacques Fellay, Jacques Fellay, The Swiss HIV Cohort Study (SHCS)
Published 2018-07-01

Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes

by Saskia Pfrengle, Judith Neukamm, Meriam Guellil, Marcel Keller, Martyna Molak, Charlotte Avanzi, Alena Kushniarevich, Núria Montes, Gunnar U. Neumann, Ella Reiter, Rezeda I. Tukhbatova, Nataliya Y. Berezina, Alexandra P. Buzhilova, Dmitry S. Korobov, Stian Suppersberger Hamre, Vitor M. J. Matos, Maria T. Ferreira, Laura González-Garrido, Sofia N. Wasterlain, Célia Lopes, Ana Luisa Santos, Nathalie Antunes-Ferreira, Vitória Duarte, Ana Maria Silva, Linda Melo, Natasa Sarkic, Lehti Saag, Kristiina Tambets, Philippe Busso, Stewart T. Cole, Alexei Avlasovich, Charlotte A. Roberts, Alison Sheridan, Craig Cessford, John Robb, Johannes Krause, Christiana L. Scheib, Sarah A. Inskip, Verena J. Schuenemann
Published 2021-10-01

Use of genomic tools to improve cattle health in the context of infectious diseases

by Mikolaj Marek Raszek, Le Luo Guan, Graham Stuart Plastow
Published 2016-03-01

Population-based analysis of ocular Chlamydia trachomatis in trachoma-endemic West African communities identifies genomic markers of disease severity

by A. R. Last, H. Pickering, C. h. Roberts, F. Coll, J. Phelan, S. E. Burr, E. Cassama, M. Nabicassa, H. M. B. Seth-Smith, J. Hadfield, L. T. Cutcliffe, I. N. Clarke, D. C. W. Mabey, R. L. Bailey, T. G. Clark, N. R. Thomson, M. J. Holland
Published 2018-02-01

Presence of Chromosomal<i> crpP</i>-<i>like</i> Genes Is Not Always Associated with Ciprofloxacin Resistance in <i>Pseudomonas aeruginosa</i> Clinical Isolates Recovered in ICU Pat...

by Marta Hernández-García, María García-Castillo, Sergio García-Fernández, Diego López-Mendoza, Jazmín Díaz-Regañón, João Romano, Leonor Pássaro, Laura Paixão, Rafael Cantón
Published 2021-02-01