A Review About Transcription Factor Binding Sites Prediction Based on Deep Learning

by Yuanqi Zeng, Meiqin Gong, Meng Lin, Dongrui Gao, Yongqing Zhang
Published 2020-01-01

A Mutation in the Drosophila melanogaster eve Stripe 2 Minimal Enhancer Is Buffered by Flanking Sequences

by Francheska López-Rivera, Olivia K. Foster Rhoades, Ben J. Vincent, Edward C. G. Pym, Meghan D. J. Bragdon, Javier Estrada, Angela H. DePace, Zeba Wunderlich
Published 2020-12-01

A preliminary computational outputs versus experimental results: Application of sTRAP, a biophysical tool for the analysis of SNPs of transcription factor‐binding sites

by Shirin Moradifard, Reza Saghiri, Parastoo Ehsani, Fatemeh Mirkhani, Mina Ebrahimi‐Rad
Published 2020-05-01

Enhancer Binding Site Architecture Regulates Cell-specific Notch Signal Strength and Transcription

by Kuang, Yi
Published 2020

TIGERi: modeling and visualizing the responses to perturbation of a transcription factor network

by Namshik Han, Harry A. Noyes, Andy Brass
Published 2017-05-01

Profiling of Human Molecular Pathways Affected by Retrotransposons at the Level of Regulation by Transcription Factor Proteins

by Daniil Nikitin, Daniil Nikitin, Dmitry Penzar, Andrew Garazha, Andrew Garazha, Maxim Sorokin, Maxim Sorokin, Maxim Sorokin, Victor Tkachev, Nicolas Borisov, Nicolas Borisov, Alexander Poltorak, Vladimir Prassolov, Anton A. Buzdin, Anton A. Buzdin, Anton A. Buzdin, Anton A. Buzdin
Published 2018-01-01

Rice Sesquiterpene Plays Important Roles in Antixenosis against Brown Planthopper in Rice

by Wintai Kamolsukyeunyong, Wissarut Sukhaket, Kitsada Pitija, Pornwalai Thorngkham, Sugunya Mahatheeranont, Theerayut Toojinda, Apichart Vanavichit
Published 2021-05-01

SigmoID: a user-friendly tool for improving bacterial genome annotation through analysis of transcription control signals

by Yevgeny Nikolaichik, Aliaksandr U. Damienikan
Published 2016-05-01

Comparative Genomic Analysis of the Regulation of Aromatic Metabolism in Betaproteobacteria

by Inna A. Suvorova, Mikhail S. Gelfand, Mikhail S. Gelfand, Mikhail S. Gelfand
Published 2019-03-01

SNP variation in the promoter of the <it>PRKAG3</it> gene and association with meat quality traits in pig

by Ryan Marion T, Hamill Ruth M, O’Halloran Aisling M, Davey Grace C, McBryan Jean, Mullen Anne M, McGee Chris, Gispert Marina, Southwood Olwen I, Sweeney Torres
Published 2012-07-01

Structural Fingerprints of Transcription Factor Binding Site Regions

by Peter Willett, Eleanor J. J. Gardiner, Christopher A. Hunter
Published 2009-03-01

TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets

by Louis T. Dang, Markus Tondl, Man Ho H. Chiu, Jerico Revote, Benedict Paten, Vincent Tano, Alex Tokolyi, Florence Besse, Greg Quaife-Ryan, Helen Cumming, Mark J. Drvodelic, Michael P. Eichenlaub, Jeannette C. Hallab, Julian S. Stolper, Fernando J. Rossello, Marie A. Bogoyevitch, David A. Jans, Hieu T. Nim, Enzo R. Porrello, James E. Hudson, Mirana Ramialison
Published 2018-04-01

In Silico Discovery of Pollen-specific Cis-regulatory Elements in the Arabidopsis Hydroxyproline-Rich Glycoprotein Gene Family

by Wolfe, Richard A.
Published 2014

Rigorous and thorough bioinformatic analyses of olfactory receptor promoters confirm enrichment of O/E and homeodomain binding sites but reveal no new common motifs

by Young Janet M, Luche Ralf M, Trask Barbara J
Published 2011-11-01

Predicting DNA Motifs by Using Multi-Objective Hybrid Adaptive Biogeography-Based Optimization

by Siling Feng, Ziqiang Yang, Mengxing Huang
Published 2017-09-01

Transcriptional similarity in couples reveals the impact of shared environment and lifestyle on gene regulation through modified cytosines

by Ke Tang, Wei Zhang
Published 2016-06-01

A Combined Motif Discovery Method

by Lu, Daming
Published 2009

agReg-SNPdb: A Database of Regulatory SNPs for Agricultural Animal Species

by Selina Klees, Felix Heinrich, Armin Otto Schmitt, Mehmet Gültas
Published 2021-08-01

Temporal control of muscle gene expression in an ascidian embryo

by Yu, Deli
Published 2019

An efficient algorithm for improving structure-based prediction of transcription factor binding sites

by Alvin Farrel, Jun-tao Guo
Published 2017-07-01