Social networks shape the transmission dynamics of hepatitis C virus.

by Camila Malta Romano, Isabel M V Guedes de Carvalho-Mello, Leda F Jamal, Fernando Lucas de Melo, Atila Iamarino, Marco Motoki, João Renato Rebello Pinho, Edward C Holmes, Paolo Marinho de Andrade Zanotto, VGDN Consortium
Published 2010-01-01

Phylogeny and origins of hantaviruses harbored by bats, insectivores, and rodents.

by Wen-Ping Guo, Xian-Dan Lin, Wen Wang, Jun-Hua Tian, Mei-Li Cong, Hai-Lin Zhang, Miao-Ruo Wang, Run-Hong Zhou, Jian-Bo Wang, Ming-Hui Li, Jianguo Xu, Edward C Holmes, Yong-Zhen Zhang
Published 2013-02-01

Ongoing spillover of Hantaan and Gou hantaviruses from rodents is associated with hemorrhagic fever with renal syndrome (HFRS) in China.

by Wen Wang, Miao-Ruo Wang, Xian-Dan Lin, Wen-Ping Guo, Ming-Hui Li, Sheng-Hua Mei, Zhao-Mei Li, Mei-Li Cong, Rui-Lan Jiang, Run-Hong Zhou, Edward C Holmes, Alexander Plyusnin, Yong-Zhen Zhang
Published 2013-01-01

Evolution of an Eurasian avian-like influenza virus in naïve and vaccinated pigs.

by Pablo R Murcia, Joseph Hughes, Patrizia Battista, Lucy Lloyd, Gregory J Baillie, Ricardo H Ramirez-Gonzalez, Doug Ormond, Karen Oliver, Debra Elton, Jennifer A Mumford, Mario Caccamo, Paul Kellam, Bryan T Grenfell, Edward C Holmes, James L N Wood
Published 2012-01-01

Spread of Canine Influenza A(H3N2) Virus, United States

by Ian E.H. Voorhees, Amy L. Glaser, Kathy L. Toohey-Kurth, Sandra Newbury, Benjamin D. Dalziel, Edward Dubovi, Keith Poulsen, Christian Leutenegger, Katriina J.E. Willgert, Laura Brisbane-Cohen, Jill Richardson-Lopez, Edward C. Holmes, Colin R. Parrish
Published 2017-12-01

Stochastic processes are key determinants of short-term evolution in influenza a virus.

by Martha I Nelson, Lone Simonsen, Cecile Viboud, Mark A Miller, Jill Taylor, Kirsten St George, Sara B Griesemer, Elodie Ghedin, Naomi A Sengamalay, David J Spiro, Igor Volkov, Bryan T Grenfell, David J Lipman, Jeffery K Taubenberger, Edward C Holmes
Published 2006-12-01

Correction: Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus.

by Martha I Nelson, Lone Simonsen, Cecile Viboud, Mark A Miller, Jill Taylor, Kirsten St. George, Sara B Griesemer, Elodie Ghedin, Naomi A Sengamalay, David J Spiro, Igor Volkov, Brian T Grenfell, David J Lipman, Jeffrey K Taubenberger, Edward C Holmes
Published 2006-12-01

The evolutionary genetics and emergence of avian influenza viruses in wild birds.

by Vivien G Dugan, Rubing Chen, David J Spiro, Naomi Sengamalay, Jennifer Zaborsky, Elodie Ghedin, Jacqueline Nolting, David E Swayne, Jonathan A Runstadler, George M Happ, Dennis A Senne, Ruixue Wang, Richard D Slemons, Edward C Holmes, Jeffery K Taubenberger
Published 2008-05-01

Shared Common Ancestry of Rodent Alphacoronaviruses Sampled Globally

by Theocharis Tsoleridis, Joseph G. Chappell, Okechukwu Onianwa, Denise A. Marston, Anthony R. Fooks, Elodie Monchatre-Leroy, Gérald Umhang, Marcel A. Müller, Jan F. Drexler, Christian Drosten, Rachael E. Tarlinton, Charles P. McClure, Edward C. Holmes, Jonathan K. Ball
Published 2019-01-01

Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus

by Kirsten I Bos, Alexander Herbig, Jason Sahl, Nicholas Waglechner, Mathieu Fourment, Stephen A Forrest, Jennifer Klunk, Verena J Schuenemann, Debi Poinar, Melanie Kuch, G Brian Golding, Olivier Dutour, Paul Keim, David M Wagner, Edward C Holmes, Johannes Krause, Hendrik N Poinar
Published 2016-01-01

PHYRN: a robust method for phylogenetic analysis of highly divergent sequences.

by Gaurav Bhardwaj, Kyung Dae Ko, Yoojin Hong, Zhenhai Zhang, Ngai Lam Ho, Sree V Chintapalli, Lindsay A Kline, Matthew Gotlin, David Nicholas Hartranft, Morgen E Patterson, Foram Dave, Evan J Smith, Edward C Holmes, Randen L Patterson, Damian B van Rossum
Published 2012-01-01

Emergence of the Asian 1 genotype of dengue virus serotype 2 in viet nam: in vivo fitness advantage and lineage replacement in South-East Asia.

by Thi Ty Hang Vu, Edward C Holmes, Veasna Duong, Thien Quy Nguyen, Tinh Hien Tran, Michael Quail, Carol Churcher, Julian Parkhill, Jane Cardosa, Jeremy Farrar, Bridget Wills, Niall J Lennon, Bruce W Birren, Philippe Buchy, Matthew R Henn, Cameron P Simmons
Published 2010-07-01

Limited Sustained Local Transmission of HIV-1 CRF01_AE in New South Wales, Australia

by Francesca Di Giallonardo, Angie N. Pinto, Phillip Keen, Ansari Shaik, Alex Carrera, Hanan Salem, Barbara Telfer, Craig Cooper, Karen Price, Christine Selvey, Joanne Holden, Nadine Bachmann, Frederick J. Lee, Dominic E. Dwyer, Sebastián Duchêne, Edward C. Holmes, Andrew E. Grulich, Anthony D. Kelleher
Published 2019-05-01

Frequent in-migration and highly focal transmission of dengue viruses among children in Kamphaeng Phet, Thailand.

by Maia A Rabaa, Chonticha Klungthong, In-Kyu Yoon, Edward C Holmes, Piyawan Chinnawirotpisan, Butsaya Thaisomboonsuk, Anon Srikiatkhachorn, Alan L Rothman, Darunee Tannitisupawong, Jared Aldstadt, Ananda Nisalak, Mammen P Mammen, Robert V Gibbons, Timothy P Endy, Thanyalak Fansiri, Thomas W Scott, Richard G Jarman
Published 2013-01-01

Facemask against viral respiratory infections among Hajj pilgrims: A challenging cluster-randomized trial.

by Mohammad Alfelali, Elizabeth A Haworth, Osamah Barasheed, Al-Mamoon Badahdah, Hamid Bokhary, Mohamed Tashani, Mohammad I Azeem, Jen Kok, Janette Taylor, Elizabeth H Barnes, Haitham El Bashir, Gulam Khandaker, Edward C Holmes, Dominic E Dwyer, Leon G Heron, Godwin J Wilson, Robert Booy, Harunor Rashid, Hajj Research Team
Published 2020-01-01

A Bat-Derived Putative Cross-Family Recombinant Coronavirus with a Reovirus Gene.

by Canping Huang, William J Liu, Wen Xu, Tao Jin, Yingze Zhao, Jingdong Song, Yi Shi, Wei Ji, Hao Jia, Yongming Zhou, Honghua Wen, Honglan Zhao, Huaxing Liu, Hong Li, Qihui Wang, Ying Wu, Liang Wang, Di Liu, Guang Liu, Hongjie Yu, Edward C Holmes, Lin Lu, George F Gao
Published 2016-09-01

Genomic epidemiology reveals transmission patterns and dynamics of SARS-CoV-2 in Aotearoa New Zealand

by Jemma L. Geoghegan, Xiaoyun Ren, Matthew Storey, James Hadfield, Lauren Jelley, Sarah Jefferies, Jill Sherwood, Shevaun Paine, Sue Huang, Jordan Douglas, Fábio K. Mendes, Andrew Sporle, Michael G. Baker, David R. Murdoch, Nigel French, Colin R. Simpson, David Welch, Alexei J. Drummond, Edward C. Holmes, Sebastián Duchêne, Joep de Ligt
Published 2020-12-01

Co-circulation of multiple hemorrhagic fever diseases with distinct clinical characteristics in Dandong, China.

by Zhi-Hai Chen, Xin-Cheng Qin, Rui Song, Yi Shen, Xiao-Ping Chen, Wen Wang, Yong-Xiang Zhao, Jing-Shan Zhang, Jin-Rong He, Ming-Hui Li, Xue-Hua Zhao, De-Wei Liu, Xiao-Kang Fu, Di Tian, Xing-Wang Li, Jianguo Xu, Alexander Plyusnin, Edward C Holmes, Yong-Zhen Zhang
Published 2014-01-01

Use of Genomics to Track Coronavirus Disease Outbreaks, New Zealand

by Jemma L. Geoghegan, Jordan Douglas, Xiaoyun Ren, Matthew Storey, James Hadfield, Olin K. Silander, Nikki E. Freed, Lauren Jelley, Sarah Jefferies, Jillian Sherwood, Shevaun Paine, Sue Huang, Andrew Sporle, Michael G. Baker, David R. Murdoch, Alexei J. Drummond, David Welch, Colin R. Simpson, Nigel French, Edward C. Holmes, Joep de Ligt
Published 2021-05-01

A molecular portrait of maternal sepsis from Byzantine Troy

by Alison M Devault, Tatum D Mortimer, Andrew Kitchen, Henrike Kiesewetter, Jacob M Enk, G Brian Golding, John Southon, Melanie Kuch, Ana T Duggan, William Aylward, Shea N Gardner, Jonathan E Allen, Andrew M King, Gerard Wright, Makoto Kuroda, Kengo Kato, Derek EG Briggs, Gino Fornaciari, Edward C Holmes, Hendrik N Poinar, Caitlin S Pepperell
Published 2017-01-01