Transcription Factor NKX6.3 Sheds Light on Gastric Cancer Progression

by Alison C. Testa, Alistair R.R. Forrest
Published 2016-07-01

Human genetics and genomics meetings going virtual: practical lessons learned from two international meetings in early 2020

by Alistair R. R. Forrest, Gabriela M. Repetto, Juergen K. V. Reichardt
Published 2020-07-01

The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome.

by Laurence D Hurst, Avazeh T Ghanbarian, Alistair R R Forrest, FANTOM consortium, Lukasz Huminiecki
Published 2015-12-01

Predicting cell-to-cell communication networks using NATMI

by Rui Hou, Elena Denisenko, Huan Ting Ong, Jordan A. Ramilowski, Alistair R. R. Forrest
Published 2020-10-01

MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines.

by Yukari Takahashi, Alistair R R Forrest, Emi Maeno, Takehiro Hashimoto, Carsten O Daub, Jun Yasuda
Published 2009-08-01

Improved CRISPR/Cas9 gene editing in primary human myoblasts using low confluency cultures on Matrigel

by Hayley Goullée, Rhonda L. Taylor, Alistair R. R. Forrest, Nigel G. Laing, Gianina Ravenscroft, Joshua S. Clayton
Published 2021-09-01

Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells.

by Erik Arner, Alistair R R Forrest, Anna Ehrlund, Niklas Mejhert, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Jurga Laurencikiene, Mikael Rydén, Peter Arner, FANTOM Consortium
Published 2014-01-01

Correction: Corrigendum: A draft network of ligand-receptor-mediated multicellular signalling in human

by Jordan A. Ramilowski, Tatyana Goldberg, Jayson Harshbarger, Edda Kloppmann, Marina Lizio, Venkata P. Satagopam, Masayoshi Itoh, Hideya Kawaji, Piero Carninci, Burkhard Rost, Alistair R. R. Forrest
Published 2016-02-01

Conserved temporal ordering of promoter activation implicates common mechanisms governing the immediate early response across cell types and stimuli

by Annalaura Vacca, Masayoshi Itoh, Hideya Kawaji, Erik Arner, Timo Lassmann, Carsten O. Daub, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Stuart Aitken, Colin A. Semple
Published 2018-08-01

Mapping mammalian cell-type-specific transcriptional regulatory networks using KD-CAGE and ChIP-seq data in the TC-YIK cell line.

by Marina eLizio, Marina eLizio, Yuri eIshizu, Yuri eIshizu, Masayoshi eItoh, Masayoshi eItoh, Masayoshi eItoh, Timo eLassmann, Timo eLassmann, Akira eHasegawa, Akira eHasegawa, Atsutaka eKubosaki, Jessica eSeverin, Jessica eSeverin, Hideya eKawaji, Hideya eKawaji, Hideya eKawaji, Yukio eNakamura, Harukazu eSuzuki, Harukazu eSuzuki, Yoshihide eHayashizaki, Yoshihide eHayashizaki, Piero eCarninci, Piero eCarninci, Alistair R R Forrest, Alistair R R Forrest, Alistair R R Forrest
Published 2015-11-01

Systematic assessment of tissue dissociation and storage biases in single-cell and single-nucleus RNA-seq workflows

by Elena Denisenko, Belinda B. Guo, Matthew Jones, Rui Hou, Leanne de Kock, Timo Lassmann, Daniel Poppe, Olivier Clément, Rebecca K. Simmons, Ryan Lister, Alistair R. R. Forrest
Published 2020-06-01

LRRN4 and UPK3B are markers of primary mesothelial cells.

by Mutsumi Kanamori-Katayama, Ai Kaiho, Yuri Ishizu, Yuko Okamura-Oho, Okio Hino, Masaaki Abe, Takumi Kishimoto, Hisahiko Sekihara, Yukio Nakamura, Harukazu Suzuki, Alistair R R Forrest, Yoshihide Hayashizaki
Published 2011-01-01

Automated workflow for preparation of cDNA for cap analysis of gene expression on a single molecule sequencer.

by Masayoshi Itoh, Miki Kojima, Sayaka Nagao-Sato, Eri Saijo, Timo Lassmann, Mutsumi Kanamori-Katayama, Ai Kaiho, Marina Lizio, Hideya Kawaji, Piero Carninci, Alistair R R Forrest, Yoshihide Hayashizaki
Published 2012-01-01

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.

by Daniel Carbajo, Shigeyuki Magi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Erik Arner, Alistair R R Forrest, Piero Carninci, Yoshihide Hayashizaki, Carsten O Daub, FANTOM consortium, Mariko Okada-Hatakeyama, Jessica C Mar
Published 2015-01-01

Correction to: Relatively frequent switching of transcription start sites during cerebellar development

by Peter Zhang, Emmanuel Dimont, Thomas Ha, Douglas J. Swanson, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, the FANTOM Consortium, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Winston Hide, Dan Goldowitz
Published 2018-01-01

Systematic analysis of transcription start sites in avian development.

by Marina Lizio, Ruslan Deviatiiarov, Hiroki Nagai, Laura Galan, Erik Arner, Masayoshi Itoh, Timo Lassmann, Takeya Kasukawa, Akira Hasegawa, Marian A Ros, Yoshihide Hayashizaki, Piero Carninci, Alistair R R Forrest, Hideya Kawaji, Oleg Gusev, Guojun Sheng
Published 2017-09-01

Transcriptional dynamics reveal critical roles for non-coding RNAs in the immediate-early response.

by Stuart Aitken, Shigeyuki Magi, Ahmad M N Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O Daub, Erik Arner, Piero Carninci, Alistair R R Forrest, Yoshihide Hayashizaki, FANTOM Consortium, Levon M Khachigian, Mariko Okada-Hatakeyama, Colin A Semple
Published 2015-04-01

Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages

by Sugata Roy, Sebastian Schmeier, Bogumil Kaczkowski, Erik Arner, Tanvir Alam, Mumin Ozturk, Ousman Tamgue, Suraj P. Parihar, Hideya Kawaji, Masayoshi Itoh, Timo Lassmann, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Reto Guler, Vladimir B. Bajic, Frank Brombacher, Harukazu Suzuki
Published 2018-04-01

Analysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease.

by J Kenneth Baillie, Erik Arner, Carsten Daub, Michiel De Hoon, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Piero Carninci, Alistair R R Forrest, Yoshihide Hayashizaki, FANTOM Consortium, Geoffrey J Faulkner, Christine A Wells, Michael Rehli, Paul Pavli, Kim M Summers, David A Hume
Published 2017-03-01

Identification of novel cerebellar developmental transcriptional regulators with motif activity analysis

by Thomas J. Ha, Peter G. Y. Zhang, Remi Robert, Joanna Yeung, Douglas J. Swanson, Anthony Mathelier, Wyeth W. Wasserman, Sujin Im, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, The FANTOM Consortium, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Daniel Goldowitz
Published 2019-09-01