Correction to: CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

by Yulia Kondratenko, Anton Korobeynikov, Alla Lapidus
Published 2020-08-01

CDSnake: Snakemake pipeline for retrieval of annotated OTUs from paired-end reads using CD-HIT utilities

by Yulia Kondratenko, Anton Korobeynikov, Alla Lapidus
Published 2020-07-01

A New <i>Thioalkalivibrio</i> sp. Strain Isolated from Petroleum-Contaminated Brackish Estuary Sediments: A New Candidate for Bio-Based Application for Sulfide Oxidation in Halo-Al...

by Simone Becarelli, Salvatore La China, Alla Lapidus, Andrey Prijibelski, Dmitrii Polev, Giulio Petroni, Simona Di Gregorio
Published 2020-05-01

Extending rnaSPAdes functionality for hybrid transcriptome assembly

by Andrey D. Prjibelski, Giuseppe D. Puglia, Dmitry Antipov, Elena Bushmanova, Daniela Giordano, Alla Mikheenko, Domenico Vitale, Alla Lapidus
Published 2020-07-01

Genomic Variations in Drug Resistant <i>Mycobacterium tuberculosis</i> Strains Collected from Patients with Different Localization of Infection

by Ekaterina Chernyaeva, Mikhail Rotkevich, Ksenia Krasheninnikova, Alla Lapidus, Dmitrii E. Polev, Natalia Solovieva, Viacheslav Zhuravlev, Piotr Yablonsky, Stephen J. O’Brien
Published 2021-12-01

Characterization of cyanobacterial hydrocarbon composition and distribution of biosynthetic pathways.

by R Cameron Coates, Sheila Podell, Anton Korobeynikov, Alla Lapidus, Pavel Pevzner, David H Sherman, Eric E Allen, Lena Gerwick, William H Gerwick
Published 2014-01-01

Correction: Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium

by Liang Ran, John Larsson, Theoden Vigil-Stenman, Johan A. A. Nylander, Karolina Ininbergs, Wei-Wen Zheng, Alla Lapidus, Stephen Lowry, Robert Haselkorn, Birgitta Bergman
Published 2010-01-01

Genome analysis of the anaerobic thermohalophilic bacterium Halothermothrix orenii.

by Konstantinos Mavromatis, Natalia Ivanova, Iain Anderson, Athanasios Lykidis, Sean D Hooper, Hui Sun, Victor Kunin, Alla Lapidus, Philip Hugenholtz, Bharat Patel, Nikos C Kyrpides
Published 2009-01-01

Genome erosion in a nitrogen-fixing vertically transmitted endosymbiotic multicellular cyanobacterium.

by Liang Ran, John Larsson, Theoden Vigil-Stenman, Johan A A Nylander, Karolina Ininbergs, Wei-Wen Zheng, Alla Lapidus, Stephen Lowry, Robert Haselkorn, Birgitta Bergman
Published 2010-07-01

Correction: Genome Erosion in a Nitrogen-Fixing Vertically Transmitted Endosymbiotic Multicellular Cyanobacterium.

by Liang Ran, John Larsson, Theoden Vigil-Stenman, Johan A. A. Nylander, Karolina Ininbergs, Wei-Wen Zheng, Alla Lapidus, Stephen Lowry, Robert Haselkorn, Birgitta Bergman
Published 2010-01-01

The complete multipartite genome sequence of Cupriavidus necator JMP134, a versatile pollutant degrader.

by Athanasios Lykidis, Danilo Pérez-Pantoja, Thomas Ledger, Kostantinos Mavromatis, Iain J Anderson, Natalia N Ivanova, Sean D Hooper, Alla Lapidus, Susan Lucas, Bernardo González, Nikos C Kyrpides
Published 2010-03-01

Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles.

by Raúl Castanera, Leticia López-Varas, Alessandra Borgognone, Kurt LaButti, Alla Lapidus, Jeremy Schmutz, Jane Grimwood, Gúmer Pérez, Antonio G Pisabarro, Igor V Grigoriev, Jason E Stajich, Lucía Ramírez
Published 2016-06-01

The fast changing landscape of sequencing technologies and their impact on microbial genome assemblies and annotation.

by Konstantinos Mavromatis, Miriam L Land, Thomas S Brettin, Daniel J Quest, Alex Copeland, Alicia Clum, Lynne Goodwin, Tanja Woyke, Alla Lapidus, Hans Peter Klenk, Robert W Cottingham, Nikos C Kyrpides
Published 2012-01-01

Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides.

by Paul J McMurdie, Sebastian F Behrens, Jochen A Müller, Jonathan Göke, Kirsti M Ritalahti, Ryan Wagner, Eugene Goltsman, Alla Lapidus, Susan Holmes, Frank E Löffler, Alfred M Spormann
Published 2009-11-01

Autoprobiotics as an Approach for Restoration of Personalised Microbiota

by Alexander Suvorov, Alexander Suvorov, Alena Karaseva, Marina Kotyleva, Yulia Kondratenko, Nadezhda Lavrenova, Anton Korobeynikov, Petr Kozyrev, Tatiana Kramskaya, Galina Leontieva, Igor Kudryavtsev, Danyang Guo, Alla Lapidus, Elena Ermolenko, Elena Ermolenko
Published 2018-09-01

One bacterial cell, one complete genome.

by Tanja Woyke, Damon Tighe, Konstantinos Mavromatis, Alicia Clum, Alex Copeland, Wendy Schackwitz, Alla Lapidus, Dongying Wu, John P McCutcheon, Bradon R McDonald, Nancy A Moran, James Bristow, Jan-Fang Cheng
Published 2010-04-01

Patterns and implications of gene gain and loss in the evolution of Prochlorococcus.

by Gregory C Kettler, Adam C Martiny, Katherine Huang, Jeremy Zucker, Maureen L Coleman, Sebastien Rodrigue, Feng Chen, Alla Lapidus, Steven Ferriera, Justin Johnson, Claudia Steglich, George M Church, Paul Richardson, Sallie W Chisholm
Published 2007-12-01

Draft genome sequence of Marinobacterium rhizophilum CL-YJ9T (DSM 18822T), isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica

by Dong Han Choi, Gwang II Jang, Alla Lapidus, Alex Copeland, T. B. K. Reddy, Supratim Mukherjee, Marcel Huntemann, Neha Varghese, Natalia Ivanova, Manoj Pillay, Brian J. Tindall, Markus Göker, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides, Byung Cheol Cho
Published 2017-10-01

The complete genome sequence of Cupriavidus metallidurans strain CH34, a master survivalist in harsh and anthropogenic environments.

by Paul J Janssen, Rob Van Houdt, Hugo Moors, Pieter Monsieurs, Nicolas Morin, Arlette Michaux, Mohammed A Benotmane, Natalie Leys, Tatiana Vallaeys, Alla Lapidus, Sébastien Monchy, Claudine Médigue, Safiyh Taghavi, Sean McCorkle, John Dunn, Daniël van der Lelie, Max Mergeay
Published 2010-05-01

Genomic characterization of methanomicrobiales reveals three classes of methanogens.

by Iain Anderson, Luke E Ulrich, Boguslaw Lupa, Dwi Susanti, Iris Porat, Sean D Hooper, Athanasios Lykidis, Magdalena Sieprawska-Lupa, Lakshmi Dharmarajan, Eugene Goltsman, Alla Lapidus, Elizabeth Saunders, Cliff Han, Miriam Land, Susan Lucas, Biswarup Mukhopadhyay, William B Whitman, Carl Woese, James Bristow, Nikos Kyrpides
Published 2009-06-01