Using the Variable-Nearest Neighbor Method To Identify P‑Glycoprotein Substrates and Inhibitors

by Patric Schyman, Ruifeng Liu, Anders Wallqvist
Published 2016-11-01

Modeling phenotypic metabolic adaptations of Mycobacterium tuberculosis H37Rv under hypoxia.

by Xin Fang, Anders Wallqvist, Jaques Reifman
Published 2012-01-01

Probing the extent of randomness in protein interaction networks.

by Joseph Ivanic, Anders Wallqvist, Jaques Reifman
Published 2008-01-01

Using the antibody-antigen binding interface to train image-based deep neural networks for antibody-epitope classification.

by Daniel R Ripoll, Sidhartha Chaudhury, Anders Wallqvist
Published 2021-03-01

Prediction of metabolic flux distribution from gene expression data based on the flux minimization principle.

by Hyun-Seob Song, Jaques Reifman, Anders Wallqvist
Published 2014-01-01

Identifying cytochrome p450 functional networks and their allosteric regulatory elements.

by Jin Liu, Gregory J Tawa, Anders Wallqvist
Published 2013-01-01

A novel scoring approach for protein co-purification data reveals high interaction specificity.

by Xueping Yu, Joseph Ivanic, Anders Wallqvist, Jaques Reifman
Published 2009-09-01

Influence of protein abundance on high-throughput protein-protein interaction detection.

by Joseph Ivanic, Xueping Yu, Anders Wallqvist, Jaques Reifman
Published 2009-06-01

Biofilm Formation Mechanisms of Pseudomonas aeruginosa Predicted via Genome-Scale Kinetic Models of Bacterial Metabolism.

by Francisco G Vital-Lopez, Jaques Reifman, Anders Wallqvist
Published 2015-10-01

vNN Web Server for ADMET Predictions

by Patric Schyman, Ruifeng Liu, Valmik Desai, Anders Wallqvist
Published 2017-12-01

Using a genome-scale metabolic network model to elucidate the mechanism of chloroquine action in Plasmodium falciparum

by Shivendra G. Tewari, Sean T. Prigge, Jaques Reifman, Anders Wallqvist
Published 2017-08-01

Bioinformatic analysis of patient-derived ASPS gene expressions and ASPL-TFE3 fusion transcript levels identify potential therapeutic targets.

by David G Covell, Anders Wallqvist, Susan Kenney, David T Vistica
Published 2012-01-01

Molecular Simulations Reveal the Role of Antibody Fine Specificity and Viral Maturation State on Antibody-Dependent Enhancement of Infection in Dengue Virus

by Daniel R. Ripoll, Daniel R. Ripoll, Anders Wallqvist, Sidhartha Chaudhury
Published 2019-06-01

Metabolic alterations in the erythrocyte during blood-stage development of the malaria parasite

by Shivendra G. Tewari, Russell P. Swift, Jaques Reifman, Sean T. Prigge, Anders Wallqvist
Published 2020-02-01

A strategy for evaluating pathway analysis methods

by Chenggang Yu, Hyung Jun Woo, Xueping Yu, Tatsuya Oyama, Anders Wallqvist, Jaques Reifman
Published 2017-10-01

Ten simple rules on how to create open access and reproducible molecular simulations of biological systems.

by Arne Elofsson, Berk Hess, Erik Lindahl, Alexey Onufriev, David van der Spoel, Anders Wallqvist
Published 2019-01-01

TOXPANEL: A Gene-Set Analysis Tool to Assess Liver and Kidney Injuries

by Patric Schyman, Patric Schyman, Zhen Xu, Zhen Xu, Valmik Desai, Valmik Desai, Anders Wallqvist
Published 2021-02-01

PSPP: a protein structure prediction pipeline for computing clusters.

by Michael S Lee, Rajkumar Bondugula, Valmik Desai, Nela Zavaljevski, In-Chul Yeh, Anders Wallqvist, Jaques Reifman
Published 2009-07-01

Deep Neural Network Models for Predicting Chemically Induced Liver Toxicity Endpoints From Transcriptomic Responses

by Hao Wang, Hao Wang, Ruifeng Liu, Ruifeng Liu, Patric Schyman, Patric Schyman, Anders Wallqvist
Published 2019-02-01

Volumetric characteristics of idiopathic pulmonary fibrosis lungs: computational analyses of high-resolution computed tomography images of lung lobes

by Bora Sul, Lucia Flors, Joanne Cassani, Michael J. Morris, Jaques Reifman, Talissa Altes, Anders Wallqvist
Published 2019-10-01