Fast and sensitive mapping of nanopore sequencing reads with GraphMap

by Ivan Sović, Mile Šikić, Andreas Wilm, Shannon Nicole Fenlon, Swaine Chen, Niranjan Nagarajan
Published 2016-04-01

Species identification and profiling of complex microbial communities using shotgun Illumina sequencing of 16S rRNA amplicon sequences.

by Swee Hoe Ong, Vinutha Uppoor Kukkillaya, Andreas Wilm, Christophe Lay, Eliza Xin Pei Ho, Louie Low, Martin Lloyd Hibberd, Niranjan Nagarajan
Published 2013-01-01

Tracking Dengue Virus Intra-host Genetic Diversity during Human-to-Mosquito Transmission.

by Shuzhen Sim, Pauline P K Aw, Andreas Wilm, Garrett Teoh, Kien Duong Thi Hue, Nguyet Minh Nguyen, Niranjan Nagarajan, Cameron P Simmons, Martin L Hibberd
Published 2015-01-01

Analysis of Dengue Virus Genetic Diversity during Human and Mosquito Infection Reveals Genetic Constraints.

by October M Sessions, Andreas Wilm, Uma Sangumathi Kamaraj, Milly M Choy, Angelia Chow, Yuwen Chong, Xin Mei Ong, Niranjan Nagarajan, Alex R Cook, Eng Eong Ooi
Published 2015-01-01

Sustainable data analysis with Snakemake [version 2; peer review: 2 approved]

by Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher H. Tomkins-Tinch, Vanessa Sochat, Jan Forster, Soohyun Lee, Sven O. Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
Published 2021-04-01

Single-virion sequencing of lamivudine-treated HBV populations reveal population evolution dynamics and demographic history

by Yuan O. Zhu, Pauline P. K. Aw, Paola Florez de Sessions, Shuzhen Hong, Lee Xian See, Lewis Z. Hong, Andreas Wilm, Chen Hao Li, Stephane Hue, Seng Gee Lim, Niranjan Nagarajan, William F. Burkholder, Martin Hibberd
Published 2017-10-01

Human pharyngeal microbiota in age-related macular degeneration.

by Eliza Xin Pei Ho, Chui Ming Gemmy Cheung, Shuzhen Sim, Collins Wenhan Chu, Andreas Wilm, Clarabelle Bitong Lin, Ranjana Mathur, Doric Wong, Choi Mun Chan, Mayuri Bhagarva, Augustinus Laude, Tock Han Lim, Tien Yin Wong, Ching Yu Cheng, Sonia Davila, Martin Hibberd
Published 2018-01-01

Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma

by Kern Rei Chng, Sock Hoai Chan, Amanda Hui Qi Ng, Chenhao Li, Apinya Jusakul, Denis Bertrand, Andreas Wilm, Su Pin Choo, Damien Meng Yew Tan, Kiat Hon Lim, Roy Soetinko, Choon Kiat Ong, Dan G. Duda, Simona Dima, Irinel Popescu, Chaisiri Wongkham, Zhu Feng, Khay Guan Yeoh, Bin Tean Teh, Puangrat Yongvanit, Sopit Wongkham, Vajaraphongsa Bhudhisawasdi, Narong Khuntikeo, Patrick Tan, Chawalit Pairojkul, Joanne Ngeow, Niranjan Nagarajan
Published 2016-06-01

Structure mapping of dengue and Zika viruses reveals functional long-range interactions

by Roland G. Huber, Xin Ni Lim, Wy Ching Ng, Adelene Y. L. Sim, Hui Xian Poh, Yang Shen, Su Ying Lim, Karin B. Sundstrom, Xuyang Sun, Jong Ghut Aw, Horng Khit Too, Peng Hee Boey, Andreas Wilm, Tanu Chawla, Milly M. Choy, Lu Jiang, Paola Florez de Sessions, Xian Jun Loh, Sylvie Alonso, Martin Hibberd, Niranjan Nagarajan, Eng Eong Ooi, Peter J. Bond, October M. Sessions, Yue Wan
Published 2019-03-01