Intuitive Web-Based Experimental Design for High-Throughput Biomedical Data

by Andreas Friedrich, Erhan Kenar, Oliver Kohlbacher, Sven Nahnsen
Published 2015-01-01

Interpretations of Environmental Microbial Community Studies Are Biased by the Selected 16S rRNA (Gene) Amplicon Sequencing Pipeline

by Daniel Straub, Daniel Straub, Nia Blackwell, Adrian Langarica-Fuentes, Alexander Peltzer, Sven Nahnsen, Sara Kleindienst
Published 2020-10-01

Contribution of mTOR and PTEN to Radioresistance in Sporadic and NF2-Associated Vestibular Schwannomas: A Microarray and Pathway Analysis

by Isabel Gugel, Florian H. Ebner, Florian Grimm, Stefan Czemmel, Frank Paulsen, Christian Hagel, Marcos Tatagiba, Sven Nahnsen, Ghazaleh Tabatabai
Published 2020-01-01

qPortal: A platform for data-driven biomedical research.

by Christopher Mohr, Andreas Friedrich, David Wojnar, Erhan Kenar, Aydin Can Polatkan, Marius Cosmin Codrea, Stefan Czemmel, Oliver Kohlbacher, Sven Nahnsen
Published 2018-01-01

Ten simple rules for providing effective bioinformatics research support.

by Judit Kumuthini, Michael Chimenti, Sven Nahnsen, Alexander Peltzer, Rebone Meraba, Ross McFadyen, Gordon Wells, Deanne Taylor, Mark Maienschein-Cline, Jian-Liang Li, Jyothi Thimmapuram, Radha Murthy-Karuturi, Lyndon Zass
Published 2020-03-01

Measles Virus-Based Treatments Trigger a Pro-inflammatory Cascade and a Distinctive Immunopeptidome in Glioblastoma

by Srinath Rajaraman, Denis Canjuga, Michael Ghosh, Marius Cosmin Codrea, Raika Sieger, Florian Wedekink, Marcos Tatagiba, Marilin Koch, Ulrich M. Lauer, Sven Nahnsen, Hans-Georg Rammensee, Michael D. Mühlebach, Stefan Stevanovic, Ghazaleh Tabatabai
Published 2019-03-01

Sustainable data analysis with Snakemake [version 2; peer review: 2 approved]

by Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher H. Tomkins-Tinch, Vanessa Sochat, Jan Forster, Soohyun Lee, Sven O. Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
Published 2021-04-01

Clinical and Genetic Tumor Characteristics of Responding and Non-Responding Patients to PD-1 Inhibition in Hepatocellular Carcinoma

by Stephan Spahn, Daniel Roessler, Radu Pompilia, Gisela Gabernet, Beryl Primrose Gladstone, Marius Horger, Saskia Biskup, Magdalena Feldhahn, Sven Nahnsen, Franz J. Hilke, Bernhard Scheiner, Jean-François Dufour, Enrico N. De Toni, Matthias Pinter, Nisar P. Malek, Michael Bitzer
Published 2020-12-01

Absence of Non-Canonical, Inhibitory MYD88 Splice Variants in B Cell Lymphomas Correlates With Sustained NF-κB Signaling

by Yamel Cardona Gloria, Yamel Cardona Gloria, Stephan H. Bernhart, Stephan H. Bernhart, Stephan H. Bernhart, Sven Fillinger, Olaf-Oliver Wolz, Olaf-Oliver Wolz, Sabine Dickhöfer, Sabine Dickhöfer, Jakob Admard, Stephan Ossowski, Sven Nahnsen, Reiner Siebert, Reiner Siebert, Alexander N. R. Weber, Alexander N. R. Weber, Alexander N. R. Weber
Published 2021-06-01

Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune Responses

by Christoph Ruschil, Christoph Ruschil, Gisela Gabernet, Gildas Lepennetier, Simon Heumos, Miriam Kaminski, Zsuzsanna Hracsko, Martin Irmler, Johannes Beckers, Johannes Beckers, Johannes Beckers, Ulf Ziemann, Ulf Ziemann, Sven Nahnsen, Gregory P. Owens, Jeffrey L. Bennett, Jeffrey L. Bennett, Bernhard Hemmer, Bernhard Hemmer, Markus C. Kowarik, Markus C. Kowarik, Markus C. Kowarik
Published 2020-12-01

Multi-omics discovery of exome-derived neoantigens in hepatocellular carcinoma

by Markus W. Löffler, Christopher Mohr, Leon Bichmann, Lena Katharina Freudenmann, Mathias Walzer, Christopher M. Schroeder, Nico Trautwein, Franz J. Hilke, Raphael S. Zinser, Lena Mühlenbruch, Daniel J. Kowalewski, Heiko Schuster, Marc Sturm, Jakob Matthes, Olaf Riess, Stefan Czemmel, Sven Nahnsen, Ingmar Königsrainer, Karolin Thiel, Silvio Nadalin, Stefan Beckert, Hans Bösmüller, Falko Fend, Ana Velic, Boris Maček, Sebastian P. Haen, Luigi Buonaguro, Oliver Kohlbacher, Stefan Stevanović, Alfred Königsrainer, HEPAVAC Consortium, Hans-Georg Rammensee
Published 2019-04-01