Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs

by Rachel M. Colquhoun, Michael B. Hall, Leandro Lima, Leah W. Roberts, Kerri M. Malone, Martin Hunt, Brice Letcher, Jane Hawkey, Sophie George, Louise Pankhurst, Zamin Iqbal
Published 2021-09-01

Drug-Resistant Tuberculosis in Pet Ring-Tailed Lemur, Madagascar

by Marni LaFleur, Kim E. Reuter, Michael B. Hall, Hoby H. Rasoanaivo, Stuart McKernan, Paulo Ranaivomanana, Anita Michel, Marie Sylvianne Rabodoarivelo, Zamin Iqbal, Niaina Rakotosamimanana, Simon Grandjean Lapierre
Published 2021-03-01

Freshwater monitoring by nanopore sequencing

by Lara Urban, Andre Holzer, J Jotautas Baronas, Michael B Hall, Philipp Braeuninger-Weimer, Michael J Scherm, Daniel J Kunz, Surangi N Perera, Daniel E Martin-Herranz, Edward T Tipper, Susannah J Salter, Maximilian R Stammnitz
Published 2021-01-01

Sustainable data analysis with Snakemake [version 2; peer review: 2 approved]

by Felix Mölder, Kim Philipp Jablonski, Brice Letcher, Michael B. Hall, Christopher H. Tomkins-Tinch, Vanessa Sochat, Jan Forster, Soohyun Lee, Sven O. Twardziok, Alexander Kanitz, Andreas Wilm, Manuel Holtgrewe, Sven Rahmann, Sven Nahnsen, Johannes Köster
Published 2021-04-01

Antibiotic resistance prediction for Mycobacterium tuberculosis from genome sequence data with Mykrobe [version 1; peer review: 2 approved, 1 approved with reservations]

by Martin Hunt, Phelim Bradley, Simon Grandjean Lapierre, Simon Heys, Mark Thomsit, Michael B. Hall, Kerri M. Malone, Penelope Wintringer, Timothy M. Walker, Daniela M. Cirillo, Iñaki Comas, Maha R. Farhat, Phillip Fowler, Jennifer Gardy, Nazir Ismail, Thomas A. Kohl, Vanessa Mathys, Matthias Merker, Stefan Niemann, Shaheed Vally Omar, Vitali Sintchenko, Grace Smith, Dick van Soolingen, Philip Supply, Sabira Tahseen, Mark Wilcox, Irena Arandjelovic, Tim E. A. Peto, Derrick W. Crook, Zamin Iqbal
Published 2019-12-01