Should we abandon the t-test in the analysis of gene expression microarray data: a comparison of variance modeling strategies.

by Marine Jeanmougin, Aurelien de Reynies, Laetitia Marisa, Caroline Paccard, Gregory Nuel, Mickael Guedj
Published 2010-01-01

The Tumor Microenvironment in the Response to Immune Checkpoint Blockade Therapies

by Florent Petitprez, Maxime Meylan, Maxime Meylan, Aurélien de Reyniès, Catherine Sautès-Fridman, Wolf H. Fridman
Published 2020-05-01

Prognostic Biomarkers in Pancreatic Cancer: Avoiding Errata When Using the TCGA Dataset

by Remy Nicolle, Jerome Raffenne, Valerie Paradis, Anne Couvelard, Aurelien de Reynies, Yuna Blum, Jerome Cros
Published 2019-01-01

Review of Prognostic Expression Markers for Clear Cell Renal Cell Carcinoma

by Florent Petitprez, Mira Ayadi, Aurélien de Reyniès, Wolf H. Fridman, Catherine Sautès-Fridman, Sylvie Job
Published 2021-04-01

Identity by descent mapping of founder mutations in cancer using high-resolution tumor SNP data.

by Eric Letouzé, Aliou Sow, Fabien Petel, Roberto Rosati, Bonald C Figueiredo, Nelly Burnichon, Anne-Paule Gimenez-Roqueplo, Enzo Lalli, Aurélien de Reyniès
Published 2012-01-01

ROQUIN/RC3H1 alterations are not found in angioimmunoblastic T-cell lymphoma.

by Tiphanie Auguste, Marion Travert, Karin Tarte, Patricia Amé-Thomas, Catherine Artchounin, Nadine Martin-Garcia, Aurélien de Reynies, Laurence de Leval, Philippe Gaulard, Marie-Hélène Delfau-Larue
Published 2013-01-01

Sporadic early-onset colorectal cancer is a specific sub-type of cancer: a morphological, molecular and genetics study.

by Sylvain Kirzin, Laetitia Marisa, Rosine Guimbaud, Aurélien De Reynies, Michèle Legrain, Pierre Laurent-Puig, Pierre Cordelier, Bernard Pradère, Delphine Bonnet, Fabienne Meggetto, Guillaume Portier, Pierre Brousset, Janick Selves
Published 2014-01-01

The murine Microenvironment Cell Population counter method to estimate abundance of tissue-infiltrating immune and stromal cell populations in murine samples using gene expression

by Florent Petitprez, Sacha Levy, Cheng-Ming Sun, Maxime Meylan, Christophe Linhard, Etienne Becht, Nabila Elarouci, David Tavel, Lubka T. Roumenina, Mira Ayadi, Catherine Sautès-Fridman, Wolf H. Fridman, Aurélien de Reyniès
Published 2020-10-01

Deletion of chromosomes 13q and 14q is a common feature of tumors with BRCA2 mutations.

by Audrey Rouault, Guillaume Banneau, Gaëtan Macgrogan, Natalie Jones, Nabila Elarouci, Emmanuelle Barouk-Simonet, Laurence Venat, Isabelle Coupier, Eric Letouzé, Aurélien de Reyniès, Françoise Bonnet, Richard Iggo, Nicolas Sévenet, Michel Longy
Published 2012-01-01

Preferential Response of Basal-Like Head and Neck Squamous Cell Carcinoma Cell Lines to EGFR-Targeted Therapy Depending on <i>EREG</i>-Driven Oncogenic Addiction

by Sylvie Job, Aurélien de Reyniès, Betty Heller, Amélie Weiss, Eric Guérin, Christine Macabre, Sonia Ledrappier, Cyril Bour, Christine Wasylyk, Nelly Etienne-Selloum, Laurent Brino, Christian Gaiddon, Bohdan Wasylyk, Alain C. Jung
Published 2019-06-01

DECONbench: a benchmarking platform dedicated to deconvolution methods for tumor heterogeneity quantification

by Clémentine Decamps, Alexis Arnaud, Florent Petitprez, Mira Ayadi, Aurélia Baurès, Lucile Armenoult, HADACA consortium, Sergio Escalera, Isabelle Guyon, Rémy Nicolle, Richard Tomasini, Aurélien de Reyniès, Jérôme Cros, Yuna Blum, Magali Richard
Published 2021-10-01

MicroRNAs Targeting HIF-2α, VEGFR1 and/or VEGFR2 as Potential Predictive Biomarkers for VEGFR Tyrosine Kinase and HIF-2α Inhibitors in Metastatic Clear-Cell Renal Cell Carcinoma

by Lisa Kinget, Eduard Roussel, Annelies Verbiest, Maarten Albersen, Cristina Rodríguez-Antona, Osvaldo Graña-Castro, Lucía Inglada-Pérez, Jessica Zucman-Rossi, Gabrielle Couchy, Sylvie Job, Aurélien de Reyniès, Annouschka Laenen, Marcella Baldewijns, Benoit Beuselinck
Published 2021-06-01

Prognostic value of the PrPC-ILK-IDO1 axis in the mesenchymal colorectal cancer subtype

by Alexandre Ghazi, Delphine Le Corre, Camilla Pilati, Julien Taieb, Thomas Aparicio, Audrey Didelot, Shoukat Dedhar, Claire Mulot, Karine Le Malicot, Fatima Djouadi, Aurélien de Reynies, Jean-Marie Launay, Pierre Laurent-Puig, Sophie Mouillet-Richard
Published 2021-01-01

Exquisite sensitivity of TP53 mutant and basal breast cancers to a dose-dense epirubicin-cyclophosphamide regimen.

by Philippe Bertheau, Elisabeth Turpin, David S Rickman, Marc Espié, Aurélien de Reyniès, Jean-Paul Feugeas, Louis-François Plassa, Hany Soliman, Mariana Varna, Anne de Roquancourt, Jacqueline Lehmann-Che, Yves Beuzard, Michel Marty, Jean-Louis Misset, Anne Janin, Hugues de Thé
Published 2007-03-01

Integrated multi-omics analysis of oligodendroglial tumours identifies three subgroups of 1p/19q co-deleted gliomas

by Aurélie Kamoun, Ahmed Idbaih, Caroline Dehais, Nabila Elarouci, Catherine Carpentier, Eric Letouzé, Carole Colin, Karima Mokhtari, Anne Jouvet, Emmanuelle Uro-Coste, Nadine Martin-Duverneuil, Marc Sanson, Jean-Yves Delattre, Dominique Figarella-Branger, Aurélien de Reyniès, François Ducray, POLA network
Published 2016-04-01

The Warburg effect is genetically determined in inherited pheochromocytomas.

by Judith Favier, Jean-Jacques Brière, Nelly Burnichon, Julie Rivière, Laure Vescovo, Paule Benit, Isabelle Giscos-Douriez, Aurélien De Reyniès, Jérôme Bertherat, Cécile Badoual, Frédérique Tissier, Laurence Amar, Rosella Libé, Pierre-François Plouin, Xavier Jeunemaitre, Pierre Rustin, Anne-Paule Gimenez-Roqueplo
Published 2009-09-01

The PAX-FOXO1s trigger fast trans-differentiation of chick embryonic neural cells into alveolar rhabdomyosarcoma with tissue invasive properties limited by S phase entry inhibition...

by Gloria Gonzalez Curto, Audrey Der Vartanian, Youcef El-Mokhtar Frarma, Line Manceau, Lorenzo Baldi, Selene Prisco, Nabila Elarouci, Frédéric Causeret, Daniil Korenkov, Muriel Rigolet, Frédéric Aurade, Aurélien De Reynies, Vincent Contremoulins, Frédéric Relaix, Orestis Faklaris, James Briscoe, Pascale Gilardi-Hebenstreit, Vanessa Ribes
Published 2020-11-01

IGF2 promotes growth of adrenocortical carcinoma cells, but its overexpression does not modify phenotypic and molecular features of adrenocortical carcinoma.

by Marine Guillaud-Bataille, Bruno Ragazzon, Aurélien de Reyniès, Claire Chevalier, Isabelle Francillard, Olivia Barreau, Virginie Steunou, Johann Guillemot, Frédérique Tissier, Marthe Rizk-Rabin, Fernande René-Corail, Abir Al Ghuzlan, Guillaume Assié, Xavier Bertagna, Eric Baudin, Yves Le Bouc, Jérôme Bertherat, Eric Clauser
Published 2014-01-01

Independent Component Analysis Uncovers the Landscape of the Bladder Tumor Transcriptome and Reveals Insights into Luminal and Basal Subtypes

by Anne Biton, Isabelle Bernard-Pierrot, Yinjun Lou, Clémentine Krucker, Elodie Chapeaublanc, Carlota Rubio-Pérez, Nuria López-Bigas, Aurélie Kamoun, Yann Neuzillet, Pierre Gestraud, Luca Grieco, Sandra Rebouissou, Aurélien de Reyniès, Simone Benhamou, Thierry Lebret, Jennifer Southgate, Emmanuel Barillot, Yves Allory, Andrei Zinovyev, François Radvanyi
Published 2014-11-01

Quantitative Analyses of the Tumor Microenvironment Composition and Orientation in the Era of Precision Medicine

by Florent Petitprez, Florent Petitprez, Florent Petitprez, Florent Petitprez, Cheng-Ming Sun, Cheng-Ming Sun, Cheng-Ming Sun, Laetitia Lacroix, Laetitia Lacroix, Laetitia Lacroix, Catherine Sautès-Fridman, Catherine Sautès-Fridman, Catherine Sautès-Fridman, Aurélien de Reyniès, Wolf H. Fridman, Wolf H. Fridman, Wolf H. Fridman
Published 2018-09-01