Modeling Cell-Cell Interactions from Spatial Molecular Data with Spatial Variance Component Analysis

by Damien Arnol, Denis Schapiro, Bernd Bodenmiller, Julio Saez-Rodriguez, Oliver Stegle
Published 2019-10-01

Learning time-varying information flow from single-cell epithelial to mesenchymal transition data.

by Smita Krishnaswamy, Nevena Zivanovic, Roshan Sharma, Dana Pe'er, Dana Pe'er, Bernd Bodenmiller
Published 2018-01-01

A quantitative analysis of the interplay of environment, neighborhood, and cell state in 3D spheroids

by Vito RT Zanotelli, Matthias Leutenegger, Xiao‐Kang Lun, Fanny Georgi, Natalie de Souza, Bernd Bodenmiller
Published 2020-12-01

CellCycleTRACER accounts for cell cycle and volume in mass cytometry data

by Maria Anna Rapsomaniki, Xiao-Kang Lun, Stefan Woerner, Marco Laumanns, Bernd Bodenmiller, María Rodríguez Martínez
Published 2018-02-01

Yeast Endosulfines Control Entry into Quiescence and Chronological Life Span by Inhibiting Protein Phosphatase 2A

by Séverine Bontron, Malika Jaquenoud, Stefania Vaga, Nicolas Talarek, Bernd Bodenmiller, Ruedi Aebersold, Claudio De Virgilio
Published 2013-01-01

Mechanistic Model of Signaling Dynamics Across an Epithelial Mesenchymal Transition

by James D. Wade, James D. Wade, Xiao-Kang Lun, Nevena Zivanovic, Eberhard O. Voit, Bernd Bodenmiller
Published 2020-11-01

Correction to: Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer

by Pascale Kündig, Charlotte Giesen, Hartland Jackson, Bernd Bodenmiller, Bärbel Papassotirolopus, Sandra Nicole Freiberger, Catharine Aquino, Lennart Opitz, Zsuzsanna Varga
Published 2018-07-01

Limited utility of tissue micro-arrays in detecting intra-tumoral heterogeneity in stem cell characteristics and tumor progression markers in breast cancer

by Pascale Kündig, Charlotte Giesen, Hartland Jackson, Bernd Bodenmiller, Bärbel Papassotirolopus, Sandra Nicole Freiberger, Catharine Aquino, Lennart Opitz, Zsuzsanna Varga
Published 2018-05-01

High-Dimensional Phenotyping Identifies Age-Emergent Cells in Human Mammary Epithelia

by Fanny A. Pelissier Vatter, Denis Schapiro, Hang Chang, Alexander D. Borowsky, Jonathan K. Lee, Bahram Parvin, Martha R. Stampfer, Mark A. LaBarge, Bernd Bodenmiller, James B. Lorens
Published 2018-04-01

The Human Cell Atlas

by Aviv Regev, Sarah A Teichmann, Eric S Lander, Ido Amit, Christophe Benoist, Ewan Birney, Bernd Bodenmiller, Peter Campbell, Piero Carninci, Menna Clatworthy, Hans Clevers, Bart Deplancke, Ian Dunham, James Eberwine, Roland Eils, Wolfgang Enard, Andrew Farmer, Lars Fugger, Berthold Göttgens, Nir Hacohen, Muzlifah Haniffa, Martin Hemberg, Seung Kim, Paul Klenerman, Arnold Kriegstein, Ed Lein, Sten Linnarsson, Emma Lundberg, Joakim Lundeberg, Partha Majumder, John C Marioni, Miriam Merad, Musa Mhlanga, Martijn Nawijn, Mihai Netea, Garry Nolan, Dana Pe'er, Anthony Phillipakis, Chris P Ponting, Stephen Quake, Wolf Reik, Orit Rozenblatt-Rosen, Joshua Sanes, Rahul Satija, Ton N Schumacher, Alex Shalek, Ehud Shapiro, Padmanee Sharma, Jay W Shin, Oliver Stegle, Michael Stratton, Michael J T Stubbington, Fabian J Theis, Matthias Uhlen, Alexander van Oudenaarden, Allon Wagner, Fiona Watt, Jonathan Weissman, Barbara Wold, Ramnik Xavier, Nir Yosef, Human Cell Atlas Meeting Participants
Published 2017-12-01