Ab initio reconstruction of transcriptomes of pluripotent and lineage committed cells reveals gene structures of thousands of lincRNAs

by Guttman, Mitchell, Garber, Manuel, Levin, Joshua Z., Donaghey, Julie, Robinson, James, Adiconis, Xian, Fan, Lin, Koziol, Magdalena J., Gnirke, Andreas, Nusbaum, Chad, Rinn, John L., Regev, Aviv, Lander, Eric Steven
Published 2012

Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells

by Ram, Oren, Goren, Alon, Amit, Ido, Shoresh, Noam, Yosef, Nir, Ernst, Jason, Kellis, Manolis, Issner, Robbyn, Durham, Timothy, Zhang, Xiaolan, Donaghey, Julie, Epstein, Charles B., Regev, Aviv, Bernstein, Bradley E., Gymrek, Melissa A., Coyne, Michael J.
Published 2014

lincRNAs act in the circuitry controlling pluripotency and differentiation

by Guttman, Mitchell, Donaghey, Julie, Carey, Bryce W., Garber, Manuel, Grenier, Jennifer K., Munson, Glen, Young, Geneva, Lucas, Anne Bergstom, Ach, Robert, Bruhn, Laurakay, Yang, Xiaoping, Amit, Ido, Meissner, Alexander, Regev, Aviv, Rinn, John L., Root, David E., Lander, Eric Steven
Published 2012

Integrative Analyses of Human Reprogramming Reveal Dynamic Nature of Induced Pluripotency

by Cacchiarelli, Davide, Trapnell, Cole, Ziller, Michael J, Soumillon, Magali, Cesana, Marcella, Karnik, Rahul, Donaghey, Julie, Smith, Zachary D, Ratanasirintrawoot, Sutheera, Zhang, Xiaolan, Ho Sui, Shannan J, Wu, Zhaoting, Akopian, Veronika, Gifford, Casey A, Doench, John, Rinn, John L, Daley, George Q, Meissner, Alexander, Mikkelsen, Tarjei S, Lander, Eric Steven
Published 2017

Transcriptional and Epigenetic Dynamics during Specification of Human Embryonic Stem Cells

by Gifford, Casey A, Ziller, Michael J, Gu, Hongcang, Trapnell, Cole, Donaghey, Julie, Tsankov, Alexander, Shalek, Alex K., Kelley, David R, Shishkin, Alexander A, Issner, Robbyn, Zhang, Xiaolan, Coyne, Michael J., Fostel, Jennifer L., Holmes, Laurie, Meldrim, James C., Guttman, Mitchell, Epstein, Charles B., Park, Hongkun, Kohlbacher, Oliver, Rinn, John L., Gnirke, Andreas, Bernstein, Bradley E., Meissner, Alexander, Lander, Eric Steven
Published 2014