Pebble and rock band: heuristic resolution of repeats and scaffolding in the velvet short-read de novo assembler.

by Daniel R Zerbino, Gayle K McEwen, Elliott H Margulies, Ewan Birney
Published 2009-01-01

A bioinformatics approach for determining sample identity from different lanes of high-throughput sequencing data.

by Rachel L Goldfeder, Stephen C J Parker, Subramanian S Ajay, Hatice Ozel Abaan, Elliott H Margulies
Published 2011-01-01

Early history of mammals is elucidated with the ENCODE multiple species sequencing data.

by Sergey Nikolaev, Juan I Montoya-Burgos, Elliott H Margulies, NISC Comparative Sequencing Program, Jacques Rougemont, Bruno Nyffeler, Stylianos E Antonarakis
Published 2007-01-01

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

by Yoichiro Shibata, Nathan C Sheffield, Olivier Fedrigo, Courtney C Babbitt, Matthew Wortham, Alok K Tewari, Darin London, Lingyun Song, Bum-Kyu Lee, Vishwanath R Iyer, Stephen C J Parker, Elliott H Margulies, Gregory A Wray, Terrence S Furey, Gregory E Crawford
Published 2012-06-01

Mutational signatures of de-differentiation in functional non-coding regions of melanoma genomes.

by Stephen C J Parker, Jared Gartner, Isabel Cardenas-Navia, Xiaomu Wei, Hatice Ozel Abaan, Subramanian S Ajay, Nancy F Hansen, Lingyun Song, Umesh K Bhanot, J Keith Killian, Yevgeniy Gindin, Robert L Walker, Paul S Meltzer, James C Mullikin, Terrence S Furey, Gregory E Crawford, Steven A Rosenberg, Yardena Samuels, Elliott H Margulies
Published 2012-01-01