MiR-191 Regulates Primary Human Fibroblast Proliferation and Directly Targets Multiple Oncogenes.

by Damon Polioudakis, Nathan S Abell, Vishwanath R Iyer
Published 2015-01-01

PRC2 activates interferon-stimulated genes indirectly by repressing miRNAs in glioblastoma.

by Haridha Shivram, Steven V Le, Vishwanath R Iyer
Published 2019-01-01

Global identification of Myc target genes reveals its direct role in mitochondrial biogenesis and its E-box usage in vivo.

by Jonghwan Kim, Ji-hoon Lee, Vishwanath R Iyer
Published 2008-01-01

Widespread misinterpretable ChIP-seq bias in yeast.

by Daechan Park, Yaelim Lee, Gurvani Bhupindersingh, Vishwanath R Iyer
Published 2013-01-01

Detection and benchmarking of somatic mutations in cancer genomes using RNA-seq data

by Alexandre Coudray, Anna M. Battenhouse, Philipp Bucher, Vishwanath R. Iyer
Published 2018-07-01

Mechanisms of cell cycle control revealed by a systematic and quantitative overexpression screen in S. cerevisiae.

by Wei Niu, Zhihua Li, Wenjing Zhan, Vishwanath R Iyer, Edward M Marcotte
Published 2008-07-01

Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation.

by Sushma Shivaswamy, Akshay Bhinge, Yongjun Zhao, Steven Jones, Martin Hirst, Vishwanath R Iyer
Published 2008-03-01

Deep RNA-Seq analysis reveals unexpected features of human prostate basal epithelial cells

by Dingxiao Zhang, Daechan Park, Yue Lu, Jianjun Shen, Vishwanath R. Iyer, Dean G. Tang
Published 2016-03-01

Ethylene induces combinatorial effects of histone H3 acetylation in gene expression in Arabidopsis

by Likai Wang, Fan Zhang, Siddharth Rode, Kevin K. Chin, Eun Esther Ko, Jonghwan Kim, Vishwanath R. Iyer, Hong Qiao
Published 2017-07-01

Global Transcriptional Profiling Reveals Distinct Functions of Thymic Stromal Subsets and Age-Related Changes during Thymic Involution

by Sanghee Ki, Daechan Park, Hilary J. Selden, Jun Seita, Haewon Chung, Jonghwan Kim, Vishwanath R. Iyer, Lauren I.R. Ehrlich
Published 2014-10-01

Chromatin accessibility mapping identifies mediators of basal transcription and retinoid-induced repression of OTX2 in medulloblastoma.

by Matthew Wortham, Changcun Guo, Monica Zhang, Lingyun Song, Bum-Kyu Lee, Vishwanath R Iyer, Terrence S Furey, Gregory E Crawford, Hai Yan, Yiping He
Published 2014-01-01

Bright/Arid3A Acts as a Barrier to Somatic Cell Reprogramming through Direct Regulation of Oct4, Sox2, and Nanog

by Melissa Popowski, Troy D. Templeton, Bum-Kyu Lee, Catherine Rhee, He Li, Cathrine Miner, Joseph D. Dekker, Shari Orlanski, Yehudit Bergman, Vishwanath R. Iyer, Carol F. Webb, Haley Tucker
Published 2014-01-01

Correction: Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

by Zhihao Ding, Yunyun Ni, Sander W Timmer, Bum-Kyu Lee, Anna Battenhouse, Sandra Louzada, Fengtang Yang, Ian Dunham, Gregory E Crawford, Jason D Lieb, Richard Durbin, Vishwanath R Iyer, Ewan Birney
Published 2015-04-01

Quantitative genetics of CTCF binding reveal local sequence effects and different modes of X-chromosome association.

by Zhihao Ding, Yunyun Ni, Sander W Timmer, Bum-Kyu Lee, Anna Battenhouse, Sandra Louzada, Fengtang Yang, Ian Dunham, Gregory E Crawford, Jason D Lieb, Richard Durbin, Vishwanath R Iyer, Ewan Birney
Published 2014-11-01

IgG Immune Complexes Inhibit Naïve T Cell Proliferation and Suppress Effector Function in Cytotoxic T Cells

by Wissam Charab, Matthew G. Rosenberger, Haridha Shivram, Justin M. Mirazee, Moses Donkor, Soumya R. Shekhar, Donjeta Gjuka, Kimberly H. Khoo, Jin Eyun Kim, Vishwanath R. Iyer, George Georgiou, George Georgiou, George Georgiou
Published 2021-08-01

Stem cell and neurogenic gene-expression profiles link prostate basal cells to aggressive prostate cancer

by Dingxiao Zhang, Daechan Park, Yi Zhong, Yue Lu, Kiera Rycaj, Shuai Gong, Xin Chen, Xin Liu, Hsueh-Ping Chao, Pamela Whitney, Tammy Calhoun-Davis, Yoko Takata, Jianjun Shen, Vishwanath R. Iyer, Dean G. Tang
Published 2016-02-01

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

by Yoichiro Shibata, Nathan C Sheffield, Olivier Fedrigo, Courtney C Babbitt, Matthew Wortham, Alok K Tewari, Darin London, Lingyun Song, Bum-Kyu Lee, Vishwanath R Iyer, Stephen C J Parker, Elliott H Margulies, Gregory A Wray, Terrence S Furey, Gregory E Crawford
Published 2012-06-01