Meraculous: de novo genome assembly with short paired-end reads.

by Jarrod A Chapman, Isaac Ho, Sirisha Sunkara, Shujun Luo, Gary P Schroth, Daniel S Rokhsar
Published 2011-01-01

Noncanonical compensation of zygotic X transcription in early Drosophila melanogaster development revealed through single-embryo RNA-seq.

by Susan E Lott, Jacqueline E Villalta, Gary P Schroth, Shujun Luo, Leath A Tonkin, Michael B Eisen
Published 2011-02-01

MetMap enables genome-scale Methyltyping for determining methylation states in populations.

by Meromit Singer, Dario Boffelli, Joseph Dhahbi, Alexander Schönhuth, Gary P Schroth, David I K Martin, Lior Pachter
Published 2010-08-01

Single-neuron RNA-Seq: technical feasibility and reproducibility

by Shenfeng eQiu, Shujun eLuo, Oleg eEvgrafov, Robin eLi, Gary P Schroth, Pat eLevitt, James A Knowles, Kai eWang
Published 2012-07-01

Erratum: Single-neuron RNA-Seq: technical feasibility and reproducibility

by Shenfeng eQiu, Shujun eLuo, Oleg eEvgrafov, Robin eLi, Gary P Schroth, Pat eLevitt, James A Knowles, Kai eWang
Published 2013-02-01

High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing.

by Hideo Matsumura, Kentaro Yoshida, Shujun Luo, Eiji Kimura, Takahiro Fujibe, Zayed Albertyn, Roberto A Barrero, Detlev H Krüger, Günter Kahl, Gary P Schroth, Ryohei Terauchi
Published 2010-08-01

Messenger RNA capture sequencing of extracellular RNA from human biofluids using a comprehensive set of spike-in controls

by Eva Hulstaert, Anneleen Decock, Annelien Morlion, Celine Everaert, Kimberly Verniers, Justine Nuytens, Nele Nijs, Gary P. Schroth, Scott Kuersten, Stephen M. Gross, Pieter Mestdagh, Jo Vandesompele
Published 2021-06-01

Integrated analysis of gene expression, CpG island methylation, and gene copy number in breast cancer cells by deep sequencing.

by Zhifu Sun, Yan W Asmann, Krishna R Kalari, Brian Bot, Jeanette E Eckel-Passow, Tiffany R Baker, Jennifer M Carr, Irina Khrebtukova, Shujun Luo, Lu Zhang, Gary P Schroth, Edith A Perez, E Aubrey Thompson
Published 2011-01-01

Bead-linked transposomes enable a normalization-free workflow for NGS library preparation

by Stephen Bruinsma, Joshua Burgess, Daniel Schlingman, Agata Czyz, Natalie Morrell, Catherine Ballenger, Heather Meinholz, Lee Brady, Anupama Khanna, Lindsay Freeberg, Rosamond G Jackson, Pascale Mathonet, Susan C Verity, Andrew F Slatter, Rooz Golshani, Haiying Grunenwald, Gary P Schroth, Niall A Gormley
Published 2018-10-01

Base-pair resolution DNA methylation sequencing reveals profoundly divergent epigenetic landscapes in acute myeloid leukemia.

by Altuna Akalin, Francine E Garrett-Bakelman, Matthias Kormaksson, Jennifer Busuttil, Lu Zhang, Irina Khrebtukova, Thomas A Milne, Yongsheng Huang, Debabrata Biswas, Jay L Hess, C David Allis, Robert G Roeder, Peter J M Valk, Bob Löwenberg, Ruud Delwel, Hugo F Fernandez, Elisabeth Paietta, Martin S Tallman, Gary P Schroth, Christopher E Mason, Ari Melnick, Maria E Figueroa
Published 2012-01-01

Genomic convergence analysis of schizophrenia: mRNA sequencing reveals altered synaptic vesicular transport in post-mortem cerebellum.

by Joann Mudge, Neil A Miller, Irina Khrebtukova, Ingrid E Lindquist, Gregory D May, Jim J Huntley, Shujun Luo, Lu Zhang, Jennifer C van Velkinburgh, Andrew D Farmer, Sharon Lewis, William D Beavis, Faye D Schilkey, Selene M Virk, C Forrest Black, M Kathy Myers, Lar C Mader, Ray J Langley, John P Utsey, Ryan W Kim, Rosalinda C Roberts, Sat Kirpal Khalsa, Meredith Garcia, Victoria Ambriz-Griffith, Richard Harlan, Wendy Czika, Stanton Martin, Russell D Wolfinger, Nora I Perrone-Bizzozero, Gary P Schroth, Stephen F Kingsmore, Stephen F Kingsmore
Published 2008-01-01