Bioinformatics for whole-genome shotgun sequencing of microbial communities.

by Kevin Chen, Lior Pachter
Published 2005-07-01

Barcode identification for single cell genomics

by Akshay Tambe, Lior Pachter
Published 2019-01-01

Protein velocity and acceleration from single-cell multiomics experiments

by Gennady Gorin, Valentine Svensson, Lior Pachter
Published 2020-02-01

Zika infection of neural progenitor cells perturbs transcription in neurodevelopmental pathways.

by Lynn Yi, Harold Pimentel, Lior Pachter
Published 2017-01-01

Association mapping from sequencing reads using k-mers

by Atif Rahman, Ingileif Hallgrímsdóttir, Michael Eisen, Lior Pachter
Published 2018-06-01

RefShannon: A genome-guided transcriptome assembler using sparse flow decomposition.

by Shunfu Mao, Lior Pachter, David Tse, Sreeram Kannan
Published 2020-01-01

Deterministic column subset selection for single-cell RNA-Seq.

by Shannon R McCurdy, Vasilis Ntranos, Lior Pachter
Published 2019-01-01

Expression reflects population structure.

by Brielin C Brown, Nicolas L Bray, Lior Pachter
Published 2018-12-01

BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq

by Johan Gustafsson, Jonathan Robinson, Jens Nielsen, Lior Pachter
Published 2021-06-01

Gene-level differential analysis at transcript-level resolution

by Lynn Yi, Harold Pimentel, Nicolas L. Bray, Lior Pachter
Published 2018-04-01

Parametric alignment of Drosophila genomes.

by Colin N Dewey, Peter M Huggins, Kevin Woods, Bernd Sturmfels, Lior Pachter
Published 2006-06-01

Structural variation among wild and industrial strains of Penicillium chrysogenum.

by Valerie L Wong, Christopher E Ellison, Michael B Eisen, Lior Pachter, Rachel B Brem
Published 2014-01-01

Exploring the genetic basis of variation in gene predictions with a synthetic association study.

by Tera C Levin, Andrew M Glazer, Lior Pachter, Rachel B Brem, Michael B Eisen
Published 2010-01-01

Low-cost, scalable, and automated fluid sampling for fluidics applications

by A. Sina Booeshaghi, Yeokyoung (Anne) Kil, Kyung Hoi (Joseph) Min, Jase Gehring, Lior Pachter
Published 2021-10-01

Odd-paired is a pioneer-like factor that coordinates with Zelda to control gene expression in embryos

by Theodora Koromila, Fan Gao, Yasuno Iwasaki, Peng He, Lior Pachter, J Peter Gergen, Angelike Stathopoulos
Published 2020-07-01

Fast statistical alignment.

by Robert K Bradley, Adam Roberts, Michael Smoot, Sudeep Juvekar, Jaeyoung Do, Colin Dewey, Ian Holmes, Lior Pachter
Published 2009-05-01

MetMap enables genome-scale Methyltyping for determining methylation states in populations.

by Meromit Singer, Dario Boffelli, Joseph Dhahbi, Alexander Schönhuth, Gary P Schroth, David I K Martin, Lior Pachter
Published 2010-08-01

Development of a low bias method for characterizing viral populations using next generation sequencing technology.

by Stephanie M Willerth, Hélder A M Pedro, Lior Pachter, Laurent M Humeau, Adam P Arkin, David V Schaffer
Published 2010-10-01

Viral population estimation using pyrosequencing.

by Nicholas Eriksson, Lior Pachter, Yumi Mitsuya, Soo-Yon Rhee, Chunlin Wang, Baback Gharizadeh, Mostafa Ronaghi, Robert W Shafer, Niko Beerenwinkel
Published 2008-05-01

Reliable and accurate diagnostics from highly multiplexed sequencing assays

by A. Sina Booeshaghi, Nathan B. Lubock, Aaron R. Cooper, Scott W. Simpkins, Joshua S. Bloom, Jase Gehring, Laura Luebbert, Sri Kosuri, Lior Pachter
Published 2020-12-01