From cell differentiation to cell collectives: Bacillus subtilis uses division of labor to migrate.

by Jordi van Gestel, Hera Vlamakis, Roberto Kolter
Published 2015-04-01

Morphological Heterogeneity and Attachment of Phaeobacter inhibens.

by Einat Segev, Adèle Tellez, Hera Vlamakis, Roberto Kolter
Published 2015-01-01

Host genetic variation and its microbiome interactions within the Human Microbiome Project

by Raivo Kolde, Eric A. Franzosa, Gholamali Rahnavard, Andrew Brantley Hall, Hera Vlamakis, Christine Stevens, Mark J. Daly, Ramnik J. Xavier, Curtis Huttenhower
Published 2018-01-01

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach

by Ya Wang, Yan Yan, Kelsey N. Thompson, Sena Bae, Emma K. Accorsi, Yancong Zhang, Jiaxian Shen, Hera Vlamakis, Erica M. Hartmann, Curtis Huttenhower
Published 2021-01-01

Bacillus subtilis Early Colonization of Arabidopsis thaliana Roots Involves Multiple Chemotaxis Receptors

by Rosalie Allard-Massicotte, Laurence Tessier, Frédééric Lééécuyer, Venkatachalam Lakshmanan, Jean-Francois Lucier, Daniel Garneau, Larissa Caudwell, Hera Vlamakis, Harsh P. Bais, Pascale B. Beauregard
Published 2016-11-01

Dynamic metabolic exchange governs a marine algal-bacterial interaction

by Einat Segev, Thomas P Wyche, Ki Hyun Kim, Jörn Petersen, Claire Ellebrandt, Hera Vlamakis, Natasha Barteneva, Joseph N Paulson, Liraz Chai, Jon Clardy, Roberto Kolter
Published 2016-11-01

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences

by Himel Mallick, Eric A. Franzosa, Lauren J. Mclver, Soumya Banerjee, Alexandra Sirota-Madi, Aleksandar D. Kostic, Clary B. Clish, Hera Vlamakis, Ramnik J. Xavier, Curtis Huttenhower
Published 2019-07-01

PolyGlcNAc-containing exopolymers enable surface penetration by non-motile Enterococcus faecalis.

by Yusibeska Ramos, Jorge Rocha, Ana L Hael, Jordi van Gestel, Hera Vlamakis, Colette Cywes-Bentley, Juan R Cubillos-Ruiz, Gerald B Pier, Michael S Gilmore, Roberto Kolter, Diana K Morales
Published 2019-02-01

Stress ulcer prophylaxis versus placebo—a blinded randomized control trial to evaluate the safety of two strategies in critically ill infants with congenital heart disease (SUPPRES...

by Kimberly I. Mills, Ben D. Albert, Lori J. Bechard, Christopher P. Duggan, Aditya Kaza, Seth Rakoff-Nahoum, Hera Vlamakis, Lynn A. Sleeper, Jane W. Newburger, Gregory P. Priebe, Nilesh M. Mehta
Published 2020-06-01

Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis

by Damian R. Plichta, Juhi Somani, Matthieu Pichaud, Zachary S. Wallace, Ana D. Fernandes, Cory A. Perugino, Harri Lähdesmäki, John H. Stone, Hera Vlamakis, Daniel C. Chung, Dinesh Khanna, Shiv Pillai, Ramnik J. Xavier
Published 2021-02-01

Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations

by Martin Stražar, Godfrey S. Temba, Hera Vlamakis, Vesla I. Kullaya, Furaha Lyamuya, Blandina T. Mmbaga, Leo A. B. Joosten, Andre J. A. M. van der Ven, Mihai G. Netea, Quirijn de Mast, Ramnik J. Xavier
Published 2021-08-01

Author Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations

by Martin Stražar, Godfrey S. Temba, Hera Vlamakis, Vesla I. Kullaya, Furaha Lyamuya, Blandina T. Mmbaga, Leo A. B. Joosten, Andre J. A. M. van der Ven, Mihai G. Netea, Quirijn de Mast, Ramnik J. Xavier
Published 2021-09-01

Publisher Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations

by Martin Stražar, Godfrey S. Temba, Hera Vlamakis, Vesla I. Kullaya, Furaha Lyamuya, Blandina T. Mmbaga, Leo A. B. Joosten, Andre J. A. M. van der Ven, Mihai G. Netea, Quirijn de Mast, Ramnik J. Xavier
Published 2021-08-01

Structure-based protein function prediction using graph convolutional networks

by Vladimir Gligorijević, P. Douglas Renfrew, Tomasz Kosciolek, Julia Koehler Leman, Daniel Berenberg, Tommi Vatanen, Chris Chandler, Bryn C. Taylor, Ian M. Fisk, Hera Vlamakis, Ramnik J. Xavier, Rob Knight, Kyunghyun Cho, Richard Bonneau
Published 2021-05-01

The influence of the gut microbiome on BCG-induced trained immunity

by Martin Stražar, Vera P. Mourits, Valerie A. C. M. Koeken, L. Charlotte J. de Bree, Simone J. C. F. M. Moorlag, Leo A. B. Joosten, Reinout van Crevel, Hera Vlamakis, Mihai G. Netea, Ramnik J. Xavier
Published 2021-09-01

The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response

by Sydney Lavoie, Kara L Conway, Kara G Lassen, Humberto B Jijon, Hui Pan, Eunyoung Chun, Monia Michaud, Jessica K Lang, Carey Ann Gallini Comeau, Jonathan M Dreyfuss, Jonathan N Glickman, Hera Vlamakis, Ashwin Ananthakrishnan, Aleksander Kostic, Wendy S Garrett, Ramnik J Xavier
Published 2019-01-01

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

by Andrew Brantley Hall, Moran Yassour, Jenny Sauk, Ashley Garner, Xiaofang Jiang, Timothy Arthur, Georgia K. Lagoudas, Tommi Vatanen, Nadine Fornelos, Robin Wilson, Madeline Bertha, Melissa Cohen, John Garber, Hamed Khalili, Dirk Gevers, Ashwin N. Ananthakrishnan, Subra Kugathasan, Eric S. Lander, Paul Blainey, Hera Vlamakis, Ramnik J. Xavier, Curtis Huttenhower
Published 2017-11-01