The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.

by James B Pettengill
Published 2015-01-01

Segal’s Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project

by James B. Pettengill, Hugh Rand
Published 2017-06-01

Corrigendum: Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Do...

by Emily A. Pettengill, James B. Pettengill, Rachel Binet
Published 2018-01-01

Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Suppor...

by Emily A. Pettengill, James B. Pettengill, Rachel Binet
Published 2016-01-01

Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

by Arthur W. Pightling, James B. Pettengill, Yu Wang, Hugh Rand, Errol Strain
Published 2019-12-01

Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousa...

by James B Pettengill, Arthur W Pightling, Joseph D Baugher, Hugh Rand, Errol Strain
Published 2016-01-01

Evaluation of Virulence Determinants Using Whole-Genome Sequencing and Phenotypic Biofilm Analysis of Outbreak-Linked Staphylococcus aureus Isolates

by Jennifer M. Hait, Guojie Cao, George Kastanis, Lanlan Yin, James B. Pettengill, Sandra M. Tallent
Published 2021-06-01

Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak

by Maria Hoffmann, John Miller, David Melka, Marc W. Allard, Eric W. Brown, James B. Pettengill
Published 2020-03-01

CFSAN SNP Pipeline: an automated method for constructing SNP matrices from next-generation sequence data

by Steve Davis, James B. Pettengill, Yan Luo, Justin Payne, Al Shpuntoff, Hugh Rand, Errol Strain
Published 2015-08-01

Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

by Arthur W. Pightling, James B. Pettengill, Yan Luo, Joseph D. Baugher, Hugh Rand, Errol Strain
Published 2018-07-01

An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella

by James B. Pettengill, Yan Luo, Steven Davis, Yi Chen, Narjol Gonzalez-Escalona, Andrea Ottesen, Hugh Rand, Marc W. Allard, Errol Strain
Published 2014-10-01

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

by James B. Pettengill, Ruth E. Timme, Rodolphe Barrangou, Magaly Toro, Marc W. Allard, Errol Strain, Steven M. Musser, Eric W. Brown
Published 2014-04-01

Co-enriching microflora associated with culture based methods to detect Salmonella from tomato phyllosphere.

by Andrea R Ottesen, Antonio Gonzalez, Rebecca Bell, Caroline Arce, Steven Rideout, Marc Allard, Peter Evans, Errol Strain, Steven Musser, Rob Knight, Eric Brown, James B Pettengill
Published 2013-01-01

A multinational listeriosis outbreak and the importance of sharing genomic data

by James B Pettengill, Austin Markell, Amanda Conrad, Heather A Carleton, Jennifer Beal, Hugh Rand, Steven Musser, Eric W Brown, Marc W Allard, Jasmine Huffman, Stic Harris, Matt Wise, Annie Locas
Published 2020-10-01

Comparative Sequence Analysis of Multidrug-Resistant IncA/C Plasmids from Salmonella enterica

by Maria Hoffmann, James B. Pettengill, Narjol Gonzalez-Escalona, John Miller, John Miller, Sherry L. Ayers, Shaohua Zhao, Marc W. Allard, Patrick F. McDermott, Eric W. Brown, Steven R. Monday
Published 2017-08-01

AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence

by Michael Feldgarden, Vyacheslav Brover, Narjol Gonzalez-Escalona, Jonathan G. Frye, Julie Haendiges, Daniel H. Haft, Maria Hoffmann, James B. Pettengill, Arjun B. Prasad, Glenn E. Tillman, Gregory H. Tyson, William Klimke
Published 2021-06-01