Easy and efficient ensemble gene set testing with EGSEA [version 1; referees: 1 approved, 3 approved with reservations]

by Monther Alhamdoosh, Charity W. Law, Luyi Tian, Julie M. Sheridan, Milica Ng, Matthew E. Ritchie
Published 2017-11-01

shRNA-seq data analysis with edgeR [v1; ref status: indexed, http://f1000r.es/38s]

by Zhiyin Dai, Julie M. Sheridan, Linden J. Gearing, Darcy L. Moore, Shian Su, Ross A. Dickins, Marnie E. Blewitt, Matthew E. Ritchie
Published 2014-04-01

Scribble modulates the MAPK/Fra1 pathway to disrupt luminal and ductal integrity and suppress tumour formation in the mammary gland.

by Nathan J Godde, Julie M Sheridan, Lorey K Smith, Helen B Pearson, Kara L Britt, Ryan C Galea, Laura L Yates, Jane E Visvader, Patrick O Humbert
Published 2014-05-01

Foxn1 regulates lineage progression in cortical and medullary thymic epithelial cells but is dispensable for medullary sublineage divergence.

by Craig S Nowell, Nicholas Bredenkamp, Stéphanie Tetélin, Xin Jin, Christin Tischner, Harsh Vaidya, Julie M Sheridan, Frances Hogg Stenhouse, Raphaela Heussen, Andrew J H Smith, C Clare Blackburn
Published 2011-11-01

edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens [v2; ref status: indexed, http://f1000r.es/4kw]

by Zhiyin Dai, Julie M. Sheridan, Linden J. Gearing, Darcy L. Moore, Shian Su, Sam Wormald, Stephen Wilcox, Liam O'Connor, Ross A. Dickins, Marnie E. Blewitt, Matthew E. Ritchie
Published 2014-10-01

Thymospheres Are Formed by Mesenchymal Cells with the Potential to Generate Adipocytes, but Not Epithelial Cells

by Julie M. Sheridan, Ashleigh Keown, Antonia Policheni, Siti N.A. Roesley, Noa Rivlin, Noam Kadouri, Matthew E. Ritchie, Reema Jain, Jakub Abramson, Tracy S.P. Heng, Daniel H.D. Gray
Published 2017-10-01

Global Changes in the Mammary Epigenome Are Induced by Hormonal Cues and Coordinated by Ezh2

by Bhupinder Pal, Toula Bouras, Wei Shi, François Vaillant, Julie M. Sheridan, Naiyang Fu, Kelsey Breslin, Kun Jiang, Matthew E. Ritchie, Matthew Young, Geoffrey J. Lindeman, Gordon K. Smyth, Jane E. Visvader
Published 2013-02-01

Linear ubiquitin chain assembly complex coordinates late thymic T-cell differentiation and regulatory T-cell homeostasis

by Charis E. Teh, Najoua Lalaoui, Reema Jain, Antonia N. Policheni, Melanie Heinlein, Silvia Alvarez-Diaz, Julie M. Sheridan, Eva Rieser, Stefanie Deuser, Maurice Darding, Hui-Fern Koay, Yifang Hu, Fiona Kupresanin, Lorraine A. O’Reilly, Dale I. Godfrey, Gordon K. Smyth, Philippe Bouillet, Andreas Strasser, Henning Walczak, John Silke, Daniel H. D. Gray
Published 2016-11-01