Computational dissection of Arabidopsis smRNAome leads to discovery of novel microRNAs and short interfering RNAs associated with transcription start sites

by Wang, Xiangfeng, Laurie, John D., Liu, Tao, Wentz, Jacqueline, Liu, X. Shirley
Published 2014

Chromatin signature of embryonic pluripotency is established during genome activation

by Vastenhouw, Nadine L., Zhang, Yong, Woods, Ian G., Imam, Farhad, Regev, Aviv, Liu, X. Shirley, Rinn, John L., Schier, Alexander F.
Published 2012

MAGeCK enables robust identification of essential genes from genome-scale CRISPR/Cas9 knockout screens

by Li, Wei, Xu, Han, Xiao, Tengfei, Cong, Le, Love, Michael I., Zhang, Feng, Irizarry, Rafael A., Liu, Jun S., Brown, Myles, Liu, X. Shirley
Published 2015

Genomics in 2011: challenges and opportunities

by Berger, Bonnie, Adams, David J., Harismendy, Olivier, Huttenhower, Curtis, Liu, X. Shirley, Myers, Chad L., Oshlack, Alicia, Rinn, John L., Walhout, Albertha J. M.
Published 2012

Sequence determinants of improved CRISPR sgRNA design

by Xu, Han, Xiao, Tengfei, Chen, Chen-Hao, Li, Wei, Meyer, Clifford A., Wu, Qiu, Wu, Di, Cong, Le, Zhang, Feng, Liu, Jun S., Brown, Myles, Liu, X. Shirley
Published 2016

MYC regulation of a "poor-prognosis" metastatic cancer cell state

by Mesirov, Jill P., Wolfer, Anita, Wittner, Ben S., Irimia, Daniel, Flavin, Richard J., Lupien, Mathieu, Gunawardane, Ruwanthi N., Meyer, Clifford A., Lightcap, Eric S., Tamayo, Pablo, Liu, X. Shirley, Shioda, Toshi, Toner, Mehmet, Loda, Massimo, Brown, Myles, Brugge, Joan S., Ramaswamy, Sridhar
Published 2014

Transcriptional role of cyclin D1 in development revealed by a "genetic-proteomic" screen

by Bienvenu, Frederic, Jirawatnotai, Siwanon, Elias, Joshua E., Meyer, Clifford A., Mizeracka, Karolina, Marson, Alexander, Frampton, Garrett M., Cole, Megan F., Odom, Duncan, Odajima, Junko, Geng, Yan, Zagozdzon, Agnieszka, Jecrois, Marie, Young, Richard A., Liu, X. Shirley, Cepko, Constance L., Gygi, Steven P., Sicinski, Piotr
Published 2012

Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer

by Shu, Shaokun, Lin, Charles Y., He, Housheng Hansen, Witwicki, Robert M., Tabassum, Doris P., Roberts, Justin M., Janiszewska, Michalina, Jin Huh, Sung, Liang, Yi, Ryan, Jeremy, Doherty, Ernest, Mohammed, Hisham, Guo, Hao, Stover, Daniel G., Ekram, Muhammad B., Peluffo, Guillermo, Brown, Jonathan, D'Santos, Clive, Krop, Ian E., Dillon, Deborah, McKeown, Michael, Ott, Christopher, Qi, Jun, Ni, Min, Rao, Prakash K., Duarte, Melissa, Wu, Shwu-Yuan, Chiang, Cheng-Ming, Anders, Lars, Young, Richard A., Winer, Eric P., Letai, Antony, Barry, William T., Carroll, Jason S., Long, Henry W., Brown, Myles, Liu, X. Shirley, Meyer, Clifford A., Polyak, Kornelia, Bradner, James
Published 2017