StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs

by Kévin Da Silva, Nicolas Pons, Magali Berland, Florian Plaza Oñate, Mathieu Almeida, Pierre Peterlongo
Published 2021-08-01

Bacterial Consumption of T4 Phages

by Jean-Jacques Godon, Ariane Bize, Hoang Ngo, Laurent Cauquil, Mathieu Almeida, Marie-Agnès Petit, Olivier Zemb
Published 2021-08-01

Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS.

by Godfrey Bwire, David A Sack, Mathieu Almeida, Shan Li, Joseph B Voeglein, Amanda Kay Debes, Atek Kagirita, Ambrose Wabwire Buyinza, Christopher Garimoi Orach, O Colin Stine
Published 2018-06-01

Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing.

by Marcelino Garrine, Inácio Mandomando, Delfino Vubil, Tacilta Nhampossa, Sozinho Acacio, Shan Li, Joseph N Paulson, Mathieu Almeida, Daryl Domman, Nicholas R Thomson, Pedro Alonso, Oscar Colin Stine
Published 2017-06-01

Three transmission events of Vibrio cholerae O1 into Lusaka, Zambia

by John Mwaba, Amanda K. Debes, Kelsey N. Murt, Patrick Shea, Michelo Simuyandi, Natasha Laban, Katayi Kazimbaya, Caroline Chisenga, Shan Li, Mathieu Almeida, Jacquelyn S. Meisel, Aaron Shibemba, Timothy Kantenga, Victor Mukonka, Geoffrey Kwenda, David A. Sack, Roma Chilengi, O. Colin Stine
Published 2021-06-01

Genetic relatedness of Vibrio cholerae isolates within and between households during outbreaks in Dhaka, Bangladesh

by Christine Marie George, Mahamud Rashid, Mathieu Almeida, K. M. Saif-Ur-Rahman, Shirajum Monira, Md. Sazzadul Islam Bhuyian, Khaled Hasan, Toslim T. Mahmud, Shan Li, Jessica Brubaker, Jamie Perin, Zillur Rahman, Munshi Mustafiz, David A. Sack, R. Bradley Sack, Munirul Alam, O. Colin Stine
Published 2017-11-01

A Data Integration Multi-Omics Approach to Study Calorie Restriction-Induced Changes in Insulin Sensitivity

by Maria Carlota Dao, Nataliya Sokolovska, Rémi Brazeilles, Séverine Affeldt, Véronique Pelloux, Edi Prifti, Edi Prifti, Julien Chilloux, Eric O. Verger, Brandon D. Kayser, Judith Aron-Wisnewsky, Judith Aron-Wisnewsky, Farid Ichou, Estelle Pujos-Guillot, Lesley Hoyles, Lesley Hoyles, Catherine Juste, Joël Doré, Marc-Emmanuel Dumas, Salwa W. Rizkalla, Bridget A. Holmes, Jean-Daniel Zucker, Jean-Daniel Zucker, Karine Clément, Karine Clément, The MICRO-Obes Consortium, Aurélie Cotillard, Sean P. Kennedy, Nicolas Pons, Emmanuelle Le Chatelier, Mathieu Almeida, Benoit Quinquis, Nathalie Galleron, Jean-Michel Batto, Pierre Renault, Stanislav Dusko Ehrlich, Hervé Blottière, Marion Leclerc, Tomas de Wouters, Patricia Lepage
Published 2019-02-01