Advances and Challenges in Metatranscriptomic Analysis

by Migun Shakya, Chien-Chi Lo, Patrick S. G. Chain
Published 2019-09-01

Genomic Analysis of Diverse Members of the Fungal Genus Monosporascus Reveals Novel Lineages, Unique Genome Content and a Potential Bacterial Associate

by Aaron J. Robinson, Donald O. Natvig, Patrick S. G. Chain
Published 2020-08-01

Epigenetic regulation of gene expression in Shiga toxin-producing Escherichia coli: Transcriptomic data

by Michelle Qiu Carter, Bin Hu, Patrick S.G. Chain
Published 2021-06-01

Recruiting human microbiome shotgun data to site-specific reference genomes.

by Gary Xie, Chien-Chi Lo, Matthew Scholz, Patrick S G Chain
Published 2014-01-01

Building International Genomics Collaboration for Global Health Security

by Helen H Cui, Tracy eErkkila, Patrick S G Chain, Momchilo eVuyisich
Published 2015-12-01

CRP-Mediated Carbon Catabolite Regulation of Yersinia pestis Biofilm Formation Is Enhanced by the Carbon Storage Regulator Protein, CsrA.

by Stephan P Willias, Sadhana Chauhan, Chien-Chi Lo, Patrick S G Chain, Vladimir L Motin
Published 2015-01-01

The Gut Microbiome and Alcoholic Liver Disease: Ethanol Consumption Drives Consistent and Reproducible Alteration in Gut Microbiota in Mice

by Erick S. LeBrun, Meghali Nighot, Viszwapriya Dharmaprakash, Anand Kumar, Chien-Chi Lo, Patrick S. G. Chain, Thomas Y. Ma
Published 2021-12-01

MicroRNA in Pancreatic Cancer: From Biology to Therapeutic Potential

by Manmeet Rawat, Kavita Kadian, Yash Gupta, Anand Kumar, Patrick S.G. Chain, Olga Kovbasnjuk, Suneel Kumar, Gulshan Parasher
Published 2019-09-01

A Gene Cluster That Encodes Histone Deacetylase Inhibitors Contributes to Bacterial Persistence and Antibiotic Tolerance in Burkholderia thailandensis

by Sofiya N. Micheva-Viteva, Migun Shakya, Samantha H. Adikari, Cheryl D. Gleasner, Nileena Velappan, Judith R. Mourant, Patrick S. G. Chain, Elizabeth Hong-Geller
Published 2020-02-01

Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants.

by Birgit eMitter, Alexandra ePetric, Maria W Shin, Patrick S G Chain, Lena eHauberg-Lotte, Barbara eReinhold-Hurek, Jerzy eNowak, Angela eSessitsch
Published 2013-04-01

Streptococcus mutans Displays Altered Stress Responses While Enhancing Biofilm Formation by Lactobacillus casei in Mixed-Species Consortium

by Zezhang T. Wen, Zezhang T. Wen, Zezhang T. Wen, Sumei Liao, Jacob P. Bitoun, Arpan De, Ashton Jorgensen, Shihai Feng, Xiaoming Xu, Patrick S. G. Chain, Page W. Caufield, Hyun Koo, Yihong Li
Published 2017-12-01

The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes.

by Mark W J van Passel, Ravi Kant, Erwin G Zoetendal, Caroline M Plugge, Muriel Derrien, Stephanie A Malfatti, Patrick S G Chain, Tanja Woyke, Airi Palva, Willem M de Vos, Hauke Smidt
Published 2011-03-01

Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity.

by Carol Chapman, Matthew Henry, Kimberly A Bishop-Lilly, Joy Awosika, Adam Briska, Ryan N Ptashkin, Trevor Wagner, Chythanya Rajanna, Hsinyi Tsang, Shannon L Johnson, Vishwesh P Mokashi, Patrick S G Chain, Shanmuga Sozhamannan
Published 2015-01-01

Genomic and metabolic diversity of Marine Group I Thaumarchaeota in the mesopelagic of two subtropical gyres.

by Brandon K Swan, Mark D Chaffin, Manuel Martinez-Garcia, Hilary G Morrison, Erin K Field, Nicole J Poulton, E Dashiell P Masland, Christopher C Harris, Alexander Sczyrba, Patrick S G Chain, Sergey Koren, Tanja Woyke, Ramunas Stepanauskas
Published 2014-01-01

Adaptive Strategies in a Poly-Extreme Environment: Differentiation of Vegetative Cells in Serratia ureilytica and Resistance to Extreme Conditions

by Sevasti Filippidou, Sevasti Filippidou, Sevasti Filippidou, Thomas Junier, Tina Wunderlin, Wafa M. Kooli, Ilona Palmieri, Andrej Al-Dourobi, Veronica Molina, Reto Lienhard, Jorge E. Spangenberg, Shannon L. Johnson, Patrick S. G. Chain, Cristina Dorador, Cristina Dorador, Pilar Junier
Published 2019-02-01

Uncovering the Core Microbiome and Distribution of Palmerolide in <i>Synoicum adareanum</i> Across the Anvers Island Archipelago<i>, </i>Antarctica

by Alison E. Murray, Nicole E. Avalon, Lucas Bishop, Karen W. Davenport, Erwan Delage, Armand E.K. Dichosa, Damien Eveillard, Mary L. Higham, Sofia Kokkaliari, Chien-Chi Lo, Christian S. Riesenfeld, Ryan M. Young, Patrick S.G. Chain, Bill J. Baker
Published 2020-06-01

Capturing single cell genomes of active polysaccharide degraders: an unexpected contribution of Verrucomicrobia.

by Manuel Martinez-Garcia, David M Brazel, Brandon K Swan, Carol Arnosti, Patrick S G Chain, Krista G Reitenga, Gary Xie, Nicole J Poulton, Monica Lluesma Gomez, Dashiell E D Masland, Brian Thompson, Wendy K Bellows, Kai Ziervogel, Chien-Chi Lo, Sanaa Ahmed, Cheryl D Gleasner, Chris J Detter, Ramunas Stepanauskas
Published 2012-01-01

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

by Christopher L Hemme, Qichao eTu, Zhou eShi, Yujia eQin, Weimin eGao, Ye eDeng, Ye eDeng, Joy eVan Nostrand, Liyou eWu, Zhili eHe, Patrick S G Chain, Susannah Green Tringe, Matthew W Fields, Edward eRubin, James M. Tiedje, Terry C Hazen, Adam eArkin, Jizhong eZhou
Published 2015-10-01

Comparative genomic and phenotypic characterization of invasive non-typhoidal Salmonella isolates from Siaya, Kenya.

by Jessica Z Kubicek-Sutherland, Gary Xie, Migun Shakya, Priya K Dighe, Lindsey L Jacobs, Hajnalka Daligault, Karen Davenport, Loreen R Stromberg, Zachary R Stromberg, Qiuying Cheng, Prakasha Kempaiah, John Michael Ong'echa, Vincent Otieno, Evans Raballah, Samuel Anyona, Collins Ouma, Patrick S G Chain, Douglas J Perkins, Harshini Mukundan, Benjamin H McMahon, Norman A Doggett
Published 2021-02-01

Widespread bacterial diversity within the bacteriome of fungi

by Aaron J. Robinson, Geoffrey L. House, Demosthenes P. Morales, Julia M. Kelliher, La Verne Gallegos-Graves, Erick S. LeBrun, Karen W. Davenport, Fabio Palmieri, Andrea Lohberger, Danaé Bregnard, Aislinn Estoppey, Matteo Buffi, Christophe Paul, Thomas Junier, Vincent Hervé, Guillaume Cailleau, Simone Lupini, Hang N. Nguyen, Amy O. Zheng, Luciana Jandelli Gimenes, Saskia Bindschedller, Debora F. Rodrigues, James H. Werner, Jamey D. Young, Pilar Junier, Patrick S. G. Chain
Published 2021-10-01