Automated metabolic reconstruction for Methanococcus jannaschii

by Sophia Tsoka, David Simon, Christos A. Ouzounis
Published 2004-01-01

Link Prediction Methods and Their Accuracy for Different Social Networks and Network Metrics

by Fei Gao, Katarzyna Musial, Colin Cooper, Sophia Tsoka
Published 2015-01-01

DyCoNet: a Gephi plugin for community detection in dynamic complex networks.

by Julie Kauffman, Aristotelis Kittas, Laura Bennett, Sophia Tsoka
Published 2014-01-01

Community Structure Detection for Directed Networks through Modularity Optimisation

by Lingjian Yang, Jonathan C. Silva, Lazaros G. Papageorgiou, Sophia Tsoka
Published 2016-11-01

Community structure detection for overlapping modules through mathematical programming in protein interaction networks.

by Laura Bennett, Aristotelis Kittas, Songsong Liu, Lazaros G Papageorgiou, Sophia Tsoka
Published 2014-01-01

Functional and topological properties in hepatocellular carcinoma transcriptome.

by Ignat Drozdov, Jan Bornschein, Thomas Wex, Najl V Valeyev, Sophia Tsoka, Peter Malfertheiner
Published 2012-01-01

Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species.

by Chrysa Pantzartzi, Elena Drosopoulou, Minas Yiangou, Ignat Drozdov, Sophia Tsoka, Christos A Ouzounis, Zacharias G Scouras
Published 2010-01-01

Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearum.

by Artem Lysenko, Martin Urban, Laura Bennett, Sophia Tsoka, Elzbieta Janowska-Sejda, Chris J Rawlings, Kim E Hammond-Kosack, Mansoor Saqi
Published 2013-01-01

PHI-Nets: A Network Resource for Ascomycete Fungal Pathogens to Annotate and Identify Putative Virulence Interacting Proteins and siRNA Targets

by Elzbieta I. Janowska-Sejda, Elzbieta I. Janowska-Sejda, Elzbieta I. Janowska-Sejda, Artem Lysenko, Martin Urban, Chris Rawlings, Sophia Tsoka, Kim E. Hammond-Kosack
Published 2019-12-01

A systems model for immune cell interactions unravels the mechanism of inflammation in human skin.

by Najl V Valeyev, Christian Hundhausen, Yoshinori Umezawa, Nikolay V Kotov, Nikolay V Kotov, Gareth Williams, Alex Clop, Crysanthi Ainali, Christos Ouzounis, Sophia Tsoka, Frank O Nestle
Published 2010-12-01

IgE re-programs alternatively-activated human macrophages towards pro-inflammatory anti-tumoural statesResearch in context

by Giulia Pellizzari, Coran Hoskin, Silvia Crescioli, Silvia Mele, Jelena Gotovina, Giulia Chiaruttini, Rodolfo Bianchini, Kristina Ilieva, Heather J. Bax, Sophie Papa, Katie E. Lacy, Erika Jensen-Jarolim, Sophia Tsoka, Debra H. Josephs, James F. Spicer, Sophia N. Karagiannis
Published 2019-05-01

Immune mediator expression signatures are associated with improved outcome in ovarian carcinoma

by Mano Nakamura, Heather J. Bax, Daniele Scotto, Elmira Amiri Souri, Sam Sollie, Robert J. Harris, Niklas Hammar, Goran Walldius, Anna Winship, Sharmistha Ghosh, Ana Montes, James F. Spicer, Mieke Van Hemelrijck, Debra H. Josephs, Katie E. Lacy, Sophia Tsoka, Sophia N. Karagiannis
Published 2019-06-01

Chondroitin Sulfate Proteoglycan 4 and Its Potential As an Antibody Immunotherapy Target across Different Tumor Types

by Kristina M. Ilieva, Kristina M. Ilieva, Anthony Cheung, Anthony Cheung, Silvia Mele, Giulia Chiaruttini, Silvia Crescioli, Merope Griffin, Mano Nakamura, Mano Nakamura, James F. Spicer, Sophia Tsoka, Katie E. Lacy, Andrew N. J. Tutt, Andrew N. J. Tutt, Sophia N. Karagiannis, Sophia N. Karagiannis
Published 2018-01-01

IgE Activates Monocytes from Cancer Patients to Acquire a Pro-Inflammatory Phenotype

by Mano Nakamura, Elmira Amiri Souri, Gabriel Osborn, Roman Laddach, Jitesh Chauhan, Chara Stavraka, Sara Lombardi, Anna Black, Atousa Khiabany, Duaa O. Khair, Mariangela Figini, Anna Winship, Sharmistha Ghosh, Ana Montes, James F. Spicer, Heather J. Bax, Debra H. Josephs, Katie E. Lacy, Sophia Tsoka, Sophia N. Karagiannis
Published 2020-11-01

B Cells in Patients With Melanoma: Implications for Treatment With Checkpoint Inhibitor Antibodies

by Zena N. Willsmore, Robert J. Harris, Silvia Crescioli, Khuluud Hussein, Helen Kakkassery, Deepika Thapa, Anthony Cheung, Anthony Cheung, Jitesh Chauhan, Heather J. Bax, Heather J. Bax, Alicia Chenoweth, Alicia Chenoweth, Roman Laddach, Roman Laddach, Gabriel Osborn, Alexa McCraw, Ricarda M. Hoffmann, Mano Nakamura, Jenny L. Geh, Alastair MacKenzie-Ross, Ciaran Healy, Sophia Tsoka, James F. Spicer, Sophie Papa, Sophie Papa, Linda Barber, Katie E. Lacy, Sophia N. Karagiannis, Sophia N. Karagiannis
Published 2021-01-01

Microbe-host interplay in atopic dermatitis and psoriasis

by Nanna Fyhrquist, Gareth Muirhead, Stefanie Prast-Nielsen, Marine Jeanmougin, Peter Olah, Tiina Skoog, Gerome Jules-Clement, Micha Feld, Mauricio Barrientos-Somarribas, Hanna Sinkko, Ellen H. van den Bogaard, Patrick L.J.M. Zeeuwen, Gijs Rikken, Joost Schalkwijk, Hanna Niehues, Walter Däubener, Silvia Kathrin Eller, Helen Alexander, Davide Pennino, Sari Suomela, Ioannis Tessas, Emilia Lybeck, Anna M. Baran, Hamid Darban, Roopesh Singh Gangwar, Ulrich Gerstel, Katharina Jahn, Piia Karisola, Lee Yan, Britta Hansmann, Shintaro Katayama, Stephan Meller, Max Bylesjö, Philippe Hupé, Francesca Levi-Schaffer, Dario Greco, Annamari Ranki, Jens M. Schröder, Jonathan Barker, Juha Kere, Sophia Tsoka, Antti Lauerma, Vassili Soumelis, Frank O. Nestle, Bernhard Homey, Björn Andersson, Harri Alenius
Published 2019-10-01