Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.

by Keira A Cohen, Thomas Abeel, Abigail Manson McGuire, Christopher A Desjardins, Vanisha Munsamy, Terrance P Shea, Bruce J Walker, Nonkqubela Bantubani, Deepak V Almeida, Lucia Alvarado, Sinéad B Chapman, Nomonde R Mvelase, Eamon Y Duffy, Michael G Fitzgerald, Pamla Govender, Sharvari Gujja, Susanna Hamilton, Clinton Howarth, Jeffrey D Larimer, Kashmeel Maharaj, Matthew D Pearson, Margaret E Priest, Qiandong Zeng, Nesri Padayatchi, Jacques Grosset, Sarah K Young, Jennifer Wortman, Koleka P Mlisana, Max R O'Donnell, Bruce W Birren, William R Bishai, Alexander S Pym, Ashlee M Earl
Published 2015-09-01

Evolution of extensively drug-resistant tuberculosis over four decades revealed by whole genome sequencing of Mycobacterium tuberculosis from KwaZulu-Natal, South Africa

by Keira A Cohen, Thomas Abeel, Abigail Manson McGuire, Christopher A Desjardins, Vanisha Munsamy, Terrance P Shea, Bruce J Walker, Nonkqubela Bantubani, Deepak V Almeida, Lucia Alvarado, Sinead Chapman, Nomonde R Mvelase, Eamon Y Duffy, Michael G Fitzgerald, Pamla Govender, Sharvari Gujja, Susanna Hamilton, Clint Howarth, Jeffrey D Larimer, Kasmheel Maharaj, Matthew D Pearson, Margaret E Priest, Qiandong Zeng, Nesri Padayatchi, Jacques Grosset, Sarah K Young, Jennifer Wortman, Koleka P Mlisana, Max R O’Donnell, Bruce W Birren, William R Bishai, Alexander S Pym, Ashlee M Earl
Published 2015-01-01

Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection.

by Matthew R Henn, Christian L Boutwell, Patrick Charlebois, Niall J Lennon, Karen A Power, Alexander R Macalalad, Aaron M Berlin, Christine M Malboeuf, Elizabeth M Ryan, Sante Gnerre, Michael C Zody, Rachel L Erlich, Lisa M Green, Andrew Berical, Yaoyu Wang, Monica Casali, Hendrik Streeck, Allyson K Bloom, Tim Dudek, Damien Tully, Ruchi Newman, Karen L Axten, Adrianne D Gladden, Laura Battis, Michael Kemper, Qiandong Zeng, Terrance P Shea, Sharvari Gujja, Carmen Zedlack, Olivier Gasser, Christian Brander, Christoph Hess, Huldrych F Günthard, Zabrina L Brumme, Chanson J Brumme, Suzane Bazner, Jenna Rychert, Jake P Tinsley, Ken H Mayer, Eric Rosenberg, Florencia Pereyra, Joshua Z Levin, Sarah K Young, Heiko Jessen, Marcus Altfeld, Bruce W Birren, Bruce D Walker, Todd M Allen
Published 2012-01-01