Advances in Cryptococcus genomics: insights into the evolution of pathogenesis

by Christina A Cuomo, Johanna Rhodes, Christopher A Desjardins
Published 2018-02-01

Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges

by Keira A. Cohen, Abigail L. Manson, Christopher A. Desjardins, Thomas Abeel, Ashlee M. Earl
Published 2019-07-01

Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans.

by Kirthi C Reddy, Tal Dror, Ryan S Underwood, Guled A Osman, Corrina R Elder, Christopher A Desjardins, Christina A Cuomo, Michalis Barkoulas, Emily R Troemel
Published 2019-01-01

Fatal Nosocomial MDR TB Identified through Routine Genetic Analysis and Whole-Genome Sequencing

by O. Martin Williams, Thomas Abeel, Nicola Casali, Keira Cohen, Alex S. Pym, Sarah B. Mungall, Christopher A. Desjardins, Anindo Banerjee, Francis Drobniewski, Ashlee M. Earl, Graham S. Cooke
Published 2015-06-01

Ubiquitin-mediated response to microsporidia and virus infection in C. elegans.

by Malina A Bakowski, Christopher A Desjardins, Margery G Smelkinson, Tiffany L Dunbar, Isaac F Lopez-Moyado, Scott A Rifkin, Scott A Rifkin, Christina A Cuomo, Emily R Troemel
Published 2014-06-01

Whole Genome Sequencing of Mycobacterium africanum Strains from Mali Provides Insights into the Mechanisms of Geographic Restriction.

by Kathryn Winglee, Abigail Manson McGuire, Mamoudou Maiga, Thomas Abeel, Terrance Shea, Christopher A Desjardins, Bassirou Diarra, Bocar Baya, Moumine Sanogo, Souleymane Diallo, Ashlee M Earl, William R Bishai
Published 2016-01-01

Evolutionary dynamics of the accessory genome of Listeria monocytogenes.

by Henk C den Bakker, Christopher A Desjardins, Allison D Griggs, Joseph E Peters, Qiandong Zeng, Sarah K Young, Chinnappa D Kodira, Chandri Yandava, Theresa A Hepburn, Brian J Haas, Bruce W Birren, Martin Wiedmann
Published 2013-01-01

Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators.

by Benjamin Hommel, Liliane Mukaremera, Radames J B Cordero, Carolina Coelho, Christopher A Desjardins, Aude Sturny-Leclère, Guilhem Janbon, John R Perfect, James A Fraser, Arturo Casadevall, Christina A Cuomo, Françoise Dromer, Kirsten Nielsen, Alexandre Alanio
Published 2018-05-01

Recombination and its impact on the genome of the haplodiploid parasitoid wasp Nasonia.

by Oliver Niehuis, Joshua D Gibson, Michael S Rosenberg, Bart A Pannebakker, Tosca Koevoets, Andrea K Judson, Christopher A Desjardins, Kathleen Kennedy, David Duggan, Leo W Beukeboom, Louis van de Zande, David M Shuker, John H Werren, Jürgen Gadau
Published 2010-01-01

Limited effects of long-term daily cranberry consumption on the gut microbiome in a placebo-controlled study of women with recurrent urinary tract infections

by Timothy J. Straub, Wen-Chi Chou, Abigail L. Manson, Henry L. Schreiber, Bruce J. Walker, Christopher A. Desjardins, Sinéad B. Chapman, Kerrie L. Kaspar, Orsalem J. Kahsai, Elizabeth Traylor, Karen W. Dodson, Meredith A. J. Hullar, Scott J. Hultgren, Christina Khoo, Ashlee M. Earl
Published 2021-02-01

Comparative and functional genomics of Rhodococcus opacus PD630 for biofuels development.

by Jason W Holder, Jil C Ulrich, Anthony C DeBono, Paul A Godfrey, Christopher A Desjardins, Jeremy Zucker, Qiandong Zeng, Alex L B Leach, Ion Ghiviriga, Christine Dancel, Thomas Abeel, Dirk Gevers, Chinnappa D Kodira, Brian Desany, Jason P Affourtit, Bruce W Birren, Anthony J Sinskey
Published 2011-09-01

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

by José F. Muéñoz, Rhys A. Farrer, Christopher A. Desjardins, Juan E. Gallo, Sean Sykes, Sharadha Sakthikumar, Elizabeth Misas, Emily A. Whiston, Eduardo Bagagli, Celia M. A. Soares, Marcus de M. Teixeira, John W. Taylor, Oliver K. Clay, Juan G. McEwen, Christina A. Cuomo, Aaron P. Mitchell
Published 2016-09-01

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia.

by José F Muñoz, Gregory M Gauthier, Christopher A Desjardins, Juan E Gallo, Jason Holder, Thomas D Sullivan, Amber J Marty, John C Carmen, Zehua Chen, Li Ding, Sharvari Gujja, Vincent Magrini, Elizabeth Misas, Makedonka Mitreva, Margaret Priest, Sakina Saif, Emily A Whiston, Sarah Young, Qiandong Zeng, William E Goldman, Elaine R Mardis, John W Taylor, Juan G McEwen, Oliver K Clay, Bruce S Klein, Christina A Cuomo
Published 2015-10-01

Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal.

by Keira A Cohen, Thomas Abeel, Abigail Manson McGuire, Christopher A Desjardins, Vanisha Munsamy, Terrance P Shea, Bruce J Walker, Nonkqubela Bantubani, Deepak V Almeida, Lucia Alvarado, Sinéad B Chapman, Nomonde R Mvelase, Eamon Y Duffy, Michael G Fitzgerald, Pamla Govender, Sharvari Gujja, Susanna Hamilton, Clinton Howarth, Jeffrey D Larimer, Kashmeel Maharaj, Matthew D Pearson, Margaret E Priest, Qiandong Zeng, Nesri Padayatchi, Jacques Grosset, Sarah K Young, Jennifer Wortman, Koleka P Mlisana, Max R O'Donnell, Bruce W Birren, William R Bishai, Alexander S Pym, Ashlee M Earl
Published 2015-09-01

Evolution of extensively drug-resistant tuberculosis over four decades revealed by whole genome sequencing of Mycobacterium tuberculosis from KwaZulu-Natal, South Africa

by Keira A Cohen, Thomas Abeel, Abigail Manson McGuire, Christopher A Desjardins, Vanisha Munsamy, Terrance P Shea, Bruce J Walker, Nonkqubela Bantubani, Deepak V Almeida, Lucia Alvarado, Sinead Chapman, Nomonde R Mvelase, Eamon Y Duffy, Michael G Fitzgerald, Pamla Govender, Sharvari Gujja, Susanna Hamilton, Clint Howarth, Jeffrey D Larimer, Kasmheel Maharaj, Matthew D Pearson, Margaret E Priest, Qiandong Zeng, Nesri Padayatchi, Jacques Grosset, Sarah K Young, Jennifer Wortman, Koleka P Mlisana, Max R O’Donnell, Bruce W Birren, William R Bishai, Alexander S Pym, Ashlee M Earl
Published 2015-01-01

Comparative genomic analysis of human fungal pathogens causing paracoccidioidomycosis.

by Christopher A Desjardins, Mia D Champion, Jason W Holder, Anna Muszewska, Jonathan Goldberg, Alexandre M Bailão, Marcelo Macedo Brigido, Márcia Eliana da Silva Ferreira, Ana Maria Garcia, Marcin Grynberg, Sharvari Gujja, David I Heiman, Matthew R Henn, Chinnappa D Kodira, Henry León-Narváez, Larissa V G Longo, Li-Jun Ma, Iran Malavazi, Alisson L Matsuo, Flavia V Morais, Maristela Pereira, Sabrina Rodríguez-Brito, Sharadha Sakthikumar, Silvia M Salem-Izacc, Sean M Sykes, Marcus Melo Teixeira, Milene C Vallejo, Maria Emília Machado Telles Walter, Chandri Yandava, Sarah Young, Qiandong Zeng, Jeremy Zucker, Maria Sueli Felipe, Gustavo H Goldman, Brian J Haas, Juan G McEwen, Gustavo Nino-Vega, Rosana Puccia, Gioconda San-Blas, Celia Maria de Almeida Soares, Bruce W Birren, Christina A Cuomo
Published 2011-10-01