Conserved noncoding transcription and core promoter regulatory code in early Drosophila development

by Philippe J Batut, Thomas R Gingeras
Published 2017-12-01

Genome-wide mapping indicates that p73 and p63 co-occupy target sites and have similar dna-binding profiles in vivo.

by Annie Yang, Zhou Zhu, Arminja Kettenbach, Philipp Kapranov, Frank McKeon, Thomas R Gingeras, Kevin Struhl
Published 2010-07-01

Multiplicity of 5' cap structures present on short RNAs.

by Rehab F Abdelhamid, Charles Plessy, Yoshio Yamauchi, Masato Taoka, Michiel de Hoon, Thomas R Gingeras, Toshiaki Isobe, Piero Carninci
Published 2014-01-01

Selective time-dependent changes in activity and cell-specific gene expression in human postmortem brain

by Fabien Dachet, James B. Brown, Tibor Valyi-Nagy, Kunwar D. Narayan, Anna Serafini, Nathan Boley, Thomas R. Gingeras, Susan E. Celniker, Gayatry Mohapatra, Jeffrey A. Loeb
Published 2021-03-01

Considerations when investigating lncRNA function in vivo

by Andrew R Bassett, Asifa Akhtar, Denise P Barlow, Adrian P Bird, Neil Brockdorff, Denis Duboule, Anne Ephrussi, Anne C Ferguson-Smith, Thomas R Gingeras, Wilfried Haerty, Douglas R Higgs, Eric A Miska, Chris P Ponting
Published 2014-08-01

The reality of pervasive transcription.

by Michael B Clark, Paulo P Amaral, Felix J Schlesinger, Marcel E Dinger, Ryan J Taft, John L Rinn, Chris P Ponting, Peter F Stadler, Kevin V Morris, Antonin Morillon, Joel S Rozowsky, Mark B Gerstein, Claes Wahlestedt, Yoshihide Hayashizaki, Piero Carninci, Thomas R Gingeras, John S Mattick
Published 2011-07-01

Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud

by Liya Wang, Zhenyuan Lu, Melissa delaBastide, Peter Van Buren, Xiaofei Wang, Cornel Ghiban, Michael Regulski, Jorg Drenkow, Xiaosa Xu, Carlos Ortiz-Ramirez, Cristina F. Marco, Sara Goodwin, Alexander Dobin, Kenneth D. Birnbaum, David P. Jackson, Robert A. Martienssen, William R. McCombie, David A. Micklos, Michael C. Schatz, Michael C. Schatz, Doreen H. Ware, Doreen H. Ware, Thomas R. Gingeras
Published 2020-03-01

Evidence for transcript networks composed of chimeric RNAs in human cells.

by Sarah Djebali, Julien Lagarde, Philipp Kapranov, Vincent Lacroix, Christelle Borel, Jonathan M Mudge, Cédric Howald, Sylvain Foissac, Catherine Ucla, Jacqueline Chrast, Paolo Ribeca, David Martin, Ryan R Murray, Xinping Yang, Lila Ghamsari, Chenwei Lin, Ian Bell, Erica Dumais, Jorg Drenkow, Michael L Tress, Josep Lluís Gelpí, Modesto Orozco, Alfonso Valencia, Nynke L van Berkum, Bryan R Lajoie, Marc Vidal, John Stamatoyannopoulos, Philippe Batut, Alex Dobin, Jennifer Harrow, Tim Hubbard, Job Dekker, Adam Frankish, Kourosh Salehi-Ashtiani, Alexandre Reymond, Stylianos E Antonarakis, Roderic Guigó, Thomas R Gingeras
Published 2012-01-01