Translating the human microbiome: a path to improving health

by Xavier, Ramnik J
Published 2021

Translating the human microbiome: a path to improving health

by Xavier, Ramnik Joseph
Published 2021

Comprehensive analysis of chromosomal mobile genetic elements in the gut microbiome reveals phylum-level niche-adaptive gene pools

by Jiang, Xiaofang, Hall, Andrew Brantley, Xavier, Ramnik J., Alm, Eric J.
Published 2020

Gene networks that compensate for crosstalk with crosstalk

by Müller, Isaak E., Rubens, Jacob R., Jun, Tomi, Xavier, Ramnik, Lu, Timothy K.
Published 2020

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis

by Ordovas-Montanes, Jose Manuel, Graham, Daniel B., Shalek, Alexander K, Xavier, Ramnik Joseph, Regev, Aviv
Published 2020

Adaptive Evolution within Gut Microbiomes of Healthy People

by Zhao, Shijie, Lieberman, Tami, Poyet, Mathilde, Kauffman, Kathryn, Gibbons, Sean M., Groussin, Mathieu, Xavier, Ramnik J., Alm, Eric J
Published 2020

Gut bacterial metabolites modulate endoplasmic reticulum stress

by Ke, Xiaobo, You, Kwontae, Pichaud, Matthieu, Haiser, Henry J., Graham, Daniel B., Vlamakis, Hera, Porter, Jeffrey A., Xavier, Ramnik J.
Published 2021

The Csk-Associated Adaptor PAG Inhibits Effector T Cell Activation in Cooperation with Phosphatase PTPN22 and Dok Adaptors

by Davidson, Dominique, Zhong, Ming-Chao, Pandolfi, Pier Paolo, Bolland, Silvia, Seed, Brian, Li, Xin, Gu, Hua, Veillette, André, Xavier, Ramnik Joseph
Published 2017

Host genetic variation and its microbiome interactions within the Human Microbiome Project

by Kolde, Raivo, Rahnavard, Gholamali, Vlamakis, Hera, Stevens, Christine, Huttenhower, Curtis, Franzosa, Eric A., Hall, Andrew Brantley, Daly, Mark J., Xavier, Ramnik Joseph
Published 2018

Control and Manipulation of Pathogens with an Optical Trap for Live Cell Imaging of Intercellular Interactions

by Tam, Jenny M., Castro, Carlos E., Heath, Robert J. W., Cardenas, Michael L., Xavier, Ramnik J., Lang, Matthew J., Vyas, Jatin M.
Published 2011

Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease

by Walker, Rebecca L., Vlamakis, Hera, Lee, Jonathan W. J., Besse, Luke A., Xanthakis, Vanessa, Vasan, Ramachandran S., Shaw, Stanley Y, Xavier, Ramnik Joseph
Published 2021

Proteins encoded in genomic regions associated with immune-mediated disease physically interact and suggest underlying biology

by Rossin, Elizabeth, Lage, Kasper, Raychaudhuri, Soumya, Xavier, Ramnik J., Tatar, Diana, Benita, Yair, International Inflammatory Bowel Disease Genetics Constortium, Cotsapas, Chris, Daly, Mark J.
Published 2011

RNF166 Determines Recruitment of Adaptor Proteins during Antibacterial Autophagy

by Heath, Robert J., Goel, Gautam, Baxt, Leigh A., Rush, Jason S., Mohanan, Vishnu, Paulus, Geraldine L.C, Jani, Vijay, Lassen, Kara G., Xavier, Ramnik Joseph
Published 2017

Clinical Activity and Quality of Life Indices Are Valid Across Ulcerative Colitis But Not Crohn's Disease Phenotypes

by Taleban, Sasha, Singh, Prashant, Yajnik, Vijay, Khalili, Hamed, Stewart, Kathleen O., Li, Darrick K., Pardi, Darrell S., Sturgeon, Holly C., Ananthakrishnan, Ashwin N., Xavier, Ramnik Joseph
Published 2017

Identifying relationships among genomic disease regions: predicting= pathogenic SNP associations and rare deletions

by Raychaudhuri, Soumya, Plenge, Robert M., Rossin, Elizabeth, Ng, Aylwin C. Y., Purcell, Shaun M., Sklar, Pamela, Scolnick, Edward Mark, Xavier, Ramnik J., Altshuler, David, Daly, Mark J.
Published 2010

Pathogen Cell-to-Cell Variability Drives Heterogeneity in Host Immune Responses

by Avraham, Roi, Brown, Douglas, Penaranda, Cristina, Jijon, Humberto B, Trombetta, John J, Satija, Rahul, Xavier, Ramnik J, Hung, Deborah T, Haseley, Nathan Scott, Shalek, Alexander K, Regev, Aviv
Published 2016

Transcription factor TFEB cell-autonomously modulates susceptibility to intestinal epithelial cell injury in vivo

by Murano, Tatsuro, Najibi, Mehran, Paulus, Geraldine L. C., Adiliaghdam, Fatemeh, Valencia-Guerrero, Aida, Selig, Martin, Wang, Xiaofei, Jeffrey, Kate, Lassen, Kara G., Irazoqui, Javier E., Xavier, Ramnik Joseph
Published 2017

Identifying Relationships among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions

by Daly, Mark J., Altshuler, David, Xavier, Ramnik J., Sklar, Pamela, Purcell, Shaun M., International Schizophrenia Consortium, Ng, Aylwin C. Y., Scolnick, Edward Mark, Rossin, Elizabeth, Plenge, Robert M., Raychaudhuri, Soumya
Published 2010

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability

by Yassour, Moran, Vatanen, Tommi, Siljander, Heli, Hämäläinen, Anu-Maaria, Härkönen, Taina, Ryhänen, Samppa J., Franzosa, Eric A., Vlamakis, Hera, Huttenhower, Curtis, Gevers, Dirk, Knip, Mikael, Lander, Eric Steven, Xavier, Ramnik Joseph
Published 2018

Invertible promoters mediate bacterial phase variation, antibiotic resistance, and host adaptation in the gut

by Jiang, Xiaofang, Hall, A. Brantley, Arthur, Timothy D., Plitchta, Damian R., Covington, Christian T., Poyet, Mathilde, Crothers, Jessica, Moses, Peter L., Tolonen, Andrew C., Vlamakis, Hera, Alm, Eric J., Xavier, Ramnik J.
Published 2020