Showing 1 - 16 results of 16 for search '"Whole genome sequencing"', query time: 0.41s Refine Results
  1. 1
    Whole Genome Sequencing for Surveillance of Diphtheria in Low Incidence Settings
    Subjects: “...whole genome sequencing...”
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    Article
  2. 2
    Evaluation of Rapid Library Preparation Protocols for Whole Genome Sequencing Based Outbreak Investigation
    Subjects: “...whole genome sequencing...”
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    Article
  3. 3
    Transition From PCR-Ribotyping to Whole Genome Sequencing Based Typing of Clostridioides difficile
    Subjects: “...whole genome sequencing...”
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    Article
  4. 4
    Phenotypic and Genomic Analyses of Burkholderia stabilis Clinical Contamination, Switzerland
    Subjects: “...whole-genome sequencing...”
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    Article
  5. 5
    First case of IMP-15-producing Pseudomonas aeruginosa in Switzerland: Challenging laboratory diagnosis using whole genome sequencing (WGS)
    Subjects: “...Whole genome sequencing (WGS)...”
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  6. 6
    Agrobacterium spp. nosocomial outbreak assessment using rapid MALDI-TOF MS based typing, confirmed by whole genome sequencing
    Subjects: “...Whole genome sequencing...”
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  7. 7
    Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study
    “... resistance (AMR) and virulence. Methods We analysed whole-genome sequence data of a diverse selection...”
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  8. 8
    SARS-CoV-2 N501Y Introductions and Transmissions in Switzerland from Beginning of October 2020 to February 2021—Implementation of Swiss-Wide Diagnostic Screening and Whole Genome Sequencing
    by Ana Rita Goncalves Cabecinhas, Tim Roloff, Madlen Stange, Claire Bertelli, Michael Huber, Alban Ramette, Chaoran Chen, Sarah Nadeau, Yannick Gerth, Sabine Yerly, Onya Opota, Trestan Pillonel, Tobias Schuster, Cesar M. J. A. Metzger, Jonas Sieber, Michael Bel, Nadia Wohlwend, Christian Baumann, Michel C. Koch, Pascal Bittel, Karoline Leuzinger, Myrta Brunner, Franziska Suter-Riniker, Livia Berlinger, Kirstine K. Søgaard, Christiane Beckmann, Christoph Noppen, Maurice Redondo, Ingrid Steffen, Helena M. B. Seth-Smith, Alfredo Mari, Reto Lienhard, Martin Risch, Oliver Nolte, Isabella Eckerle, Gladys Martinetti Lucchini, Emma B. Hodcroft, Richard A. Neher, Tanja Stadler, Hans H. Hirsch, Stephen L. Leib, Lorenz Risch, Laurent Kaiser, Alexandra Trkola, Gilbert Greub, Adrian Egli
    Published 2021-03-01
    “... PCR to rapidly screen for VoCs, which are then confirmed using amplicon sequencing or whole genome...”
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  9. 9
    A Cross-Sectional Study of Colonization Rates with Methicillin-Resistant Staphylococcus aureus (MRSA) and Extended-Spectrum Beta-Lactamase (ESBL) and Carbapenemase-Producing Enterobacteriaceae in Four Swiss Refugee Centres.
    “... microbiological procedures. Whole genome sequencing (WGS) was used to determine the relatedness of MRSA isolates...”
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    Article
  10. 10
    <i>Campylobacter jejuni</i> from Canine and Bovine Cases of Campylobacteriosis Express High Antimicrobial Resistance Rates against (Fluoro)quinolones and Tetracyclines
    “... were identified by whole genome sequencing. High rates of resistance to (fluoro)quinolones (41...”
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    Article
  11. 11
    Prosthetic valve endocarditis caused by Pseudomonas aeruginosa with variable antibacterial resistance profiles: a diagnostic challenge
    “... of the surgically removed valve. Whole genome sequencing of the last two P. aeruginosa isolates (valve and blood...”
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    Article
  12. 12
    Clinical impact of the type VI secretion system on virulence of Campylobacter species during infection
    “... targeting the hcp gene, confirmed with whole genome sequencing. Pertinent clinical data was collected...”
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    Article
  13. 13
    Discovery and Characterization of Mycobacterium basiliense sp. nov., a Nontuberculous Mycobacterium Isolated From Human Lungs
    “..., including whole genome sequencing. Biochemical characteristics generally match those of M. marinum and M...”
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    Article
  14. 14
    NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test
    “...Whole genome sequencing (WGS) enables high resolution typing of bacteria up to the single...”
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    Article
  15. 15
    Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland
    by Chaoran Chen, Sarah Ann Nadeau, Ivan Topolsky, Marc Manceau, Jana S. Huisman, Kim Philipp Jablonski, Lara Fuhrmann, David Dreifuss, Katharina Jahn, Christiane Beckmann, Maurice Redondo, Christoph Noppen, Lorenz Risch, Martin Risch, Nadia Wohlwend, Sinem Kas, Thomas Bodmer, Tim Roloff, Madlen Stange, Adrian Egli, Isabella Eckerle, Laurent Kaiser, Rebecca Denes, Mirjam Feldkamp, Ina Nissen, Natascha Santacroce, Elodie Burcklen, Catharine Aquino, Andreia Cabral de Gouvea, Maria Domenica Moccia, Simon Grüter, Timothy Sykes, Lennart Opitz, Griffin White, Laura Neff, Doris Popovic, Andrea Patrignani, Jay Tracy, Ralph Schlapbach, Emmanouil T. Dermitzakis, Keith Harshman, Ioannis Xenarios, Henri Pegeot, Lorenzo Cerutti, Deborah Penet, Anthony Blin, Melyssa Elies, Christian L. Althaus, Christian Beisel, Niko Beerenwinkel, Martin Ackermann, Tanja Stadler
    Published 2021-12-01
    “.... Methods: We generated whole genome sequences from 11.8 % of all confirmed SARS-CoV-2 cases in Switzerland...”
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    Article
  16. 16
    Burkholderia cepacia complex outbreak originating from contaminated wash gloves
    “... was conducted. The three available patient samples were whole genome sequenced, showing that they all...”
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    Article
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