Stochastic Cytokine Expression Induces Mixed T Helper Cell States

by Fang, Miaoqing, Xie, Huangming, Dougan, Stephanie K., Ploegh, Hidde, van Oudenaarden, Alexander
Published 2013

A Stevedore's Protein Knot

by Bölinger, Daniel, Sułkowska, Joanna I., Hsu, Hsiao-Ping, Mirny, Leonid A., Kardar, Mehran, Onuchic, José N., Virnau, Peter
Published 2010

The low spike density of HIV may have evolved because of the effects of T helper cell depletion on affinity maturation

by Amitai, Assaf, Kardar, Mehran
Published 2019

Chromatin Loops as Allosteric Modulators of Enhancer-Promoter Interactions

by Fudenberg, Geoffrey, Doyle, Boryana G., Imakaev, Maksim Viktorovich, Mirny, Leonid A
Published 2014

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

by Bernstein, Bradley E., Epstein, Charles B., Shoresh, Noam, Ernst, Jason, Mikkelsen, Tarjei Sigurd, Kheradpour, Pouya, Zhang, Xiaolan, Wang, Li, Issner, Robbyn, Coyne, Michael J., Durham, Timothy, Ku, Manching, Truong, Thanh, Ward, Lucas D., Altshuler, Robert Charles, Lin, Michael F., Kellis, Manolis, ENCODE Project Consortium
Published 2011

The Caenorhabditis elegans Synthetic Multivulva Genes Prevent Ras Pathway Activation by Tightly Repressing Global Ectopic Expression of lin-3 EGF

by Saffer, Adam M., Kim, Dong hyun, van Oudenaarden, Alexander, Horvitz, Howard Robert
Published 2012

Computational Prediction of Broadly Neutralizing HIV-1 Antibody Epitopes from Neutralization Activity Data

by Ferguson, Andrew L., Falkowska, Emilia, Walker, Laura M., Seaman, Michael S., Burton, Dennis R., Chakraborty, Arup K
Published 2014

Prediagnostic Serum Biomarkers as Early Detection Tools for Pancreatic Cancer in a Large Prospective Cohort Study

by Nolen, Brian M., Brand, Randall E., Prosser, Denise, Velikokhatnaya, Liudmila, Allen, Peter J., Zeh, Herbert J., Grizzle, William E., Lomakin, Aleksey, Lokshin, Anna E.
Published 2014

The Fitness Landscape of HIV-1 Gag: Advanced Modeling Approaches and Validation of Model Predictions by In Vitro Testing

by Mann, Jaclyn K., Barton, John P., Ferguson, Andrew L., Omarjee, Saleha, Walker, Bruce D., Ndung'u, Thumbi, Chakraborty, Arup K
Published 2014

Stochastic assembly produces heterogeneous communities in the Caenorhabditis elegans intestine

by Vega, Nicole, Gore, Jeff
Published 2017

Affinity Inequality among Serum Antibodies That Originate in Lymphoid Germinal Centers

by Eisen, Ellen A., Eisen, Herman N., Kang, Myung Sun, Eisen, Timothy Jonas, Chakraborty, Arup K
Published 2015

Improved Measures of Integrated Information

by Tegmark, Max Erik
Published 2017

OFFl Models: Novel Schema for Dynamical Modeling of Biological Systems

by Ogbunugafor, C. Brandon, Robinson, Sean Patrick
Published 2017

The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies

by Sok, Devin, Laserson, Uri, Laserson, Jonathan, Liu, Yi, Vigneault, Francois, Julien, Jean-Philippe, Briney, Bryan, Ramos, Alejandra, Saye, Karen F., Le, Khoa, Mahan, Alison E., Wang, Shenshen, Kardar, Mehran, Yaari, Gur, Walker, Laura M., Simen, Birgitte B., St. John, Elizabeth P., Chan-H, Swiderek, Kristine, Kleinstein, Stephen H., Alter, Galit, Seaman, Michael S., Koller, Daphne, Wilson, Ian A., Burton, Dennis R., Poignard, Pascal, Chakraborty, Arup K, Church, George M
Published 2014

The Interscutularis Muscle Connectome

by Lu, Ju, Tapia, Juan Carlos, White, Olivia L., Lichtman, Jeff W.
Published 2011

A Gene Regulatory Program for Meiotic Prophase in the Fetal Ovary

by Junker, Jan Philipp, Gill, Mark E., Mueller, Jacob L., van Oudenaarden, Alexander, Soh, Ying Qi Shirleen, Page, David C
Published 2015

Consume, Modify, Share (CMS): The Interplay between Individual Decisions and Structural Network Properties in the Diffusion of Information

by Koren, Hila, Raban, Daphne Ruth, Kaminer, Ido Efraim
Published 2017

Resource Availability Modulates the Cooperative and Competitive Nature of a Microbial Cross-Feeding Mutualism

by Hoek, Tim A., Axelrod, Kevin, Biancalani, Tommaso, Yurtsev, Eugene, Liu, Jinghui, Gore, Jeff
Published 2016

Three-Dimensional Genome Architecture Influences Partner Selection for Chromosomal Translocations in Human Disease

by Engreitz, Jesse Michael, Agarwala, Vineeta, Mirny, Leonid A.
Published 2013

A Novel Sperm-Delivered Toxin Causes Late-Stage Embryo Lethality and Transmission Ratio Distortion in C. elegans

by Seidel, Hannah S., Ailion, Michael, Li, Jialing, van Oudenaarden, Alexander, Rockman, Matthew V., Kruglyak, Leonid
Published 2011