Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics

by Khurana, Ekta, Fu, Yao, Colonna, Vincenza, Mu, Xinmeng Jasmine, Kang, Hyun Min, Lappalainen, Tuuli, Sboner, Andrea, Lochovsky, Lucas, Chen, Jieming, Harmanci, Arif, Das, Jishnu, Abyzov, Alexej, Balasubramanian, Suganthi, Beal, Kathryn, Chakravarty, Dimple, Challis, Daniel, Chen, Yuan, Clarke, Declan, Clarke, Laura, Cunningham, Fiona, Evani, Uday S., Flicek, Paul, Fragoza, Robert, Garrison, Erik, Gibbs, Richard, Gümüş, Zeynep H., Herrero, Javier, Kitabayashi, Naoki, Kong, Yong, Lage, Kasper, Liluashvili, Vaja, Lipkin, Steven M., MacArthur, Daniel G., Marth, Gabor, Muzny, Donna, Pers, Tune H., Ritchie, Graham R. S., Rosenfeld, Jeffrey A., Sisu, Cristina, Wei, Xiaomu, Wilson, Michael, Xue, Yali, Yu, Fuli, Dermitzakis, Emmanouil T., Yu, Haiyuan, Rubin, Mark A., Tyler-Smith, Chris, Gerstein, Mark
Published 2020

Clonal fitness inferred from time-series modelling of single-cell cancer genomes

by Salehi, Sohrab, Kabeer, Farhia, Ceglia, Nicholas, Andronescu, Mirela, Williams, Marc J., Campbell, Kieran R., Masud, Tehmina, Wang, Beixi, Biele, Justina, Brimhall, Jazmine, Gee, David, Lee, Hakwoo, Ting, Jerome, Zhang, Allen W., Tran, Hoa, O'Flanagan, Ciara, Dorri, Fatemeh, Rusk, Nicole, de Algara, Teresa Ruiz, Lee, So Ra, Cheng, Brian Yu Chieh, Eirew, Peter, Kono, Takako, Pham, Jenifer, Grewal, Diljot, Lai, Daniel, Moore, Richard, Mungall, Andrew J., Marra, Marco A., Hannon, Gregory J., Battistoni, Giorgia, Bressan, Dario, Cannell, Ian Gordon, Casbolt, Hannah, Fatemi, Atefeh, Jauset, Cristina, Kovačević, Tatjana, Mulvey, Claire M., Nugent, Fiona, Ribes, Marta Paez, Pearsall, Isabella, Qosaj, Fatime, Sawicka, Kirsty, Wild, Sophia A., Williams, Elena, Laks, Emma, Li, Yangguang, O'Flanagan, Ciara H., Smith, Austin, Ruiz, Teresa, Lai, Daniel, Roth, Andrew, Balasubramanian, Shankar, Lee, Maximillian, Bodenmiller, Bernd, Burger, Marcel, Kuett, Laura, Tietscher, Sandra, Windhager, Jonas, Boyden, Edward S., Alon, Shahar, Cui, Yi, Emenari, Amauche, Goodwin, Dan, Karagiannis, Emmanouil D., Sinha, Anubhav, Wassie, Asmamaw T., Caldas, Carlos, Bruna, Alejandra, Callari, Maurizio, Greenwood, Wendy, Lerda, Giulia, Eyal-Lubling, Yaniv, Rueda, Oscar M., Shea, Abigail, Harris, Owen, Becker, Robby, Grimaldi, Flaminia, Harris, Suvi, Vogl, Sara Lisa, Weselak, Joanna, Joyce, Johanna A., Watson, Spencer S., Vázquez-Garćıa, Ignacio, Tavaré, Simon, Dinh, Khanh N., Fisher, Eyal, Kunes, Russell, Walton, Nicholas A., Sa'd, Mohammad Al, Chornay, Nick, Dariush, Ali, González-Solares, Eduardo A., González-Fernández, Carlos, Yoldas, Aybüke Küpcü, Millar, Neil, Whitmarsh, Tristan, Zhuang, Xiaowei, Fan, Jean, Lee, Hsuan, Sepúlveda, Leonardo A., Xia, Chenglong, Zheng, Pu, McPherson, Andrew, Bouchard-Côté, Alexandre, Aparicio, Samuel, Shah, Sohrab P.
Published 2022

Noise Characterization and Filtering in the MicroBooNE Liquid Argon TPC

by MicroBooNE Collaboration, Acciarri, R., Adams, C., An, R., Anthony, J., Asaadi, J., Auger, M., Bagby, L., Balasubramanian, S., Baller, B., Barnes, C., Barr, G., Bass, M., Bay, F., Bishai, M., Blake, A., Bolton, T., Bullard, B., Camilleri, L., Caratelli, D., Carls, B., Fernandez, R. Castillo, Cavanna, F., Chen, H., Church, E., Cianci, D., Cohen, E., Convery, M., Crespo-Anadón, J. I., Geronimo, G. De, Del Tutto, M., Devitt, D., Dytman, S., Eberly, B., Ereditato, A., Escudero Sanchez, L., Esquivel, J., Fadeeva, A. A., Fleming, B. T., Foreman, W., Furmanski, A. P., Garcia-Gamez, D., Garvey, G. T., Genty, V., Goeldi, D., Gollapinni, S., Graf, N., Gramellini, E., Greenlee, H., Grosso, R., Guenette, R., Hackenburg, A., Hamilton, P., Hewes, J., Hill, C., Ho, J., Horton-Smith, G., Hourlier, A., Huang, E.-C, James, C., Jan de Vries, J., Jen, C.-M, Jiang, L., Johnson, R. A., Joshi, J., Jostlein, H., Kaleko, D., Karagiorgi, G., Ketchum, W., Kirby, B., Kirby, M., Kobilarcik, T., Kreslo, I., Laube, A., Li, S., Li, Y., Lister, A., Littlejohn, B. R., Lockwitz, S., Lorca, D., Louis, W. C., Luethi, M., Lundberg, B., Luo, X., Marchionni, A., Mariani, C., Marshall, J., Martinez Caicedo, D. A., Meddage, V., Miceli, T., Mills, G. B., Mooney, M., Moore, C. D., Mousseau, J., Murrells, R., Naples, D., Nienaber, P., Nowak, J., Palamara, O., Paolone, V., Papavassiliou, V., Pate, S. F., Pavlovic, Z., Piasetzky, E., Porzio, D., Pulliam, G., Qian, X., Raaf, J. L., Radeka, V., Rafique, A., Rescia, S., Rochester, L., von Rohr, C. Rudolf, Russell, B., Schmitz, D. W., Schukraft, A., Seligman, W., Shaevitz, M. H., Sinclair, J., Smith, A., Snider, E. L., Soderberg, M., Söldner-Rembold, S., Soleti, S. R., Spentzouris, P., Spitz, J., John, J. St, Strauss, T., Szelc, A. M., Tagg, N., Terao, K., Thomson, M., Thorn, C., Toups, M., Tsai, Y.-T, Tufanli, S., Usher, T., Van De Pontseele, W., Van de Water, R.G, Viren, B., Weber, M., Wickremasinghe, D. A., Wolbers, S., Woodruff, K., Yang, T., Yates, L., Yu, B., Zeller, G. P., Zennamo, J., Zhang, C., Collin, G. H., Conrad, Janet Marie, Hen, Or, Moon, Jarrett S., Wongjirad, Taritree
Published 2019