Evaluation of an Open Source Registration Package for Automatic Contour Propagation in Online Adaptive Intensity-Modulated Proton Therapy of Prostate Cancer

by Yuchuan Qiao, Thyrza Jagt, Mischa Hoogeman, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Marius Staring, Marius Staring, Marius Staring
Published 2019-11-01

Co-expression Patterns between ATN1 and ATXN2 Coincide with Brain Regions Affected in Huntington’s Disease

by Arlin Keo, Arlin Keo, N. Ahmad Aziz, Oleh Dzyubachyk, Jeroen van der Grond, Willeke M. C. van Roon-Mom, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, Marcel J. T. Reinders, Ahmed Mahfouz, Ahmed Mahfouz
Published 2017-11-01

Hierarchical Prediction of Registration Misalignment Using a Convolutional LSTM: Application to Chest CT Scans

by Hessam Sokooti, Sahar Yousefi, Mohamed S. Elmahdy, Boudewijn P. F. Lelieveldt, Marius Staring
Published 2021-01-01

Segmentation and visual analysis of whole-body mouse skeleton microSPECT.

by Artem Khmelinskii, Harald C Groen, Martin Baiker, Marion de Jong, Boudewijn P F Lelieveldt
Published 2012-01-01

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

by Sepideh Babaei, Ahmed Mahfouz, Marc Hulsman, Boudewijn P F Lelieveldt, Jeroen de Ridder, Marcel Reinders
Published 2015-05-01

Early-Life Compartmentalization of Immune Cells in Human Fetal Tissues Revealed by High-Dimensional Mass Cytometry

by Na Li, Vincent van Unen, Nannan Guo, Tamim Abdelaal, Tamim Abdelaal, Antonios Somarakis, Jeroen Eggermont, Ahmed Mahfouz, Susana M. Chuva de Sousa Lopes, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Frits Koning
Published 2019-08-01

Fast Parallel Image Registration on CPU and GPU for Diagnostic Classification of Alzheimer's Disease

by Denis P Shamonin, Esther E Bron, Boudewijn P.F. Lelieveldt, Marion eSmits, Stefan eKlein, Marius eStaring
Published 2014-01-01

A structural equation model for imaging genetics using spatial transcriptomics

by Sjoerd M. H. Huisman, Ahmed Mahfouz, Nematollah K. Batmanghelich, Boudewijn P. F. Lelieveldt, Marcel J. T. Reinders, for the Alzheimer’s Disease Neuroimaging Initiative
Published 2018-11-01

Computer-aided evaluation of inflammatory changes over time on MRI of the spine in patients with suspected axial spondyloarthritis: a feasibility study

by Evgeni Aizenberg, Rosaline van den Berg, Zineb Ez-Zaitouni, Désirée van der Heijde, Monique Reijnierse, Oleh Dzyubachyk, Boudewijn P.F. Lelieveldt
Published 2017-09-01

MRI Mouse Brain Data of Ischemic Lesion after Transient Middle Cerebral Artery Occlusion

by Inge A. Mulder, Artem Khmelinskii, Artem Khmelinskii, Artem Khmelinskii, Oleh Dzyubachyk, Sebastiaan de Jong, Marieke J. H. Wermer, Mathias Hoehn, Mathias Hoehn, Mathias Hoehn, Boudewijn P. F. Lelieveldt, Boudewijn P. F. Lelieveldt, Arn M. J. M. van den Maagdenberg, Arn M. J. M. van den Maagdenberg
Published 2017-09-01

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types

by Vincent van Unen, Thomas Höllt, Nicola Pezzotti, Na Li, Marcel J. T. Reinders, Elmar Eisemann, Frits Koning, Anna Vilanova, Boudewijn P. F. Lelieveldt
Published 2017-11-01

Heterogeneity of circulating CD8 T-cells specific to islet, neo-antigen and virus in patients with type 1 diabetes mellitus.

by Sandra Laban, Jessica S Suwandi, Vincent van Unen, Jos Pool, Joris Wesselius, Thomas Höllt, Nicola Pezzotti, Anna Vilanova, Boudewijn P F Lelieveldt, Bart O Roep
Published 2018-01-01

Quantification of aortic pulse wave velocity from a population based cohort: a fully automatic method

by Rahil Shahzad, Arun Shankar, Raquel Amier, Robin Nijveldt, Jos J. M. Westenberg, Albert de Roos, Boudewijn P. F. Lelieveldt, Rob J. van der Geest, on behalf of the Heart Brain Connection study group
Published 2019-05-01

An Adaptive Intelligence Algorithm for Undersampled Knee MRI Reconstruction

by Nicola Pezzotti, Sahar Yousefi, Mohamed S. Elmahdy, Jeroen Hendrikus Fransiscus Van Gemert, Christophe Schuelke, Mariya Doneva, Tim Nielsen, Sergey Kastryulin, Boudewijn P. F. Lelieveldt, Matthias J. P. Van Osch, Elwin De Weerdt, Marius Staring
Published 2020-01-01

Iron loading is a prominent feature of activated microglia in Alzheimer’s disease patients

by Boyd Kenkhuis, Antonios Somarakis, Lorraine de Haan, Oleh Dzyubachyk, Marieke E. IJsselsteijn, Noel F. C. C. de Miranda, Boudewijn P. F. Lelieveldt, Jouke Dijkstra, Willeke M. C. van Roon-Mom, Thomas Höllt, Louise van der Weerd
Published 2021-02-01

Interactive local super-resolution reconstruction of whole-body MRI mouse data: a pilot study with applications to bone and kidney metastases.

by Oleh Dzyubachyk, Artem Khmelinskii, Esben Plenge, Peter Kok, Thomas J A Snoeks, Dirk H J Poot, Clemens W G M Löwik, Charl P Botha, Wiro J Niessen, Louise van der Weerd, Erik Meijering, Boudewijn P F Lelieveldt
Published 2014-01-01

Author Correction: Timing and localization of human dystrophin isoform expression provide insights into the cognitive phenotype of Duchenne muscular dystrophy

by Nathalie Doorenweerd, Ahmed Mahfouz, Maaike van Putten, Rajaram Kaliyaperumal, Peter A. C. t’ Hoen, Jos G. M. Hendriksen, Annemieke M. Aartsma-Rus, Jan J. G. M. Verschuuren, Erik H. Niks, Marcel J. T. Reinders, Hermien E. Kan, Boudewijn P. F. Lelieveldt
Published 2018-03-01

Validation of full-field optical coherence tomography in distinguishing malignant and benign tissue in resected pancreatic cancer specimens.

by Labrinus van Manen, Paulien L Stegehuis, Arantza Fariña-Sarasqueta, Lorraine M de Haan, Jeroen Eggermont, Bert A Bonsing, Hans Morreau, Boudewijn P F Lelieveldt, Cornelis J H van de Velde, Alexander L Vahrmeijer, Jouke Dijkstra, J Sven D Mieog
Published 2017-01-01

Eleven grand challenges in single-cell data science

by David Lähnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Kieran R. Campbell, Niko Beerenwinkel, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P.F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
Published 2020-02-01