Decomposition of gene expression state space trajectories.

by Jessica C Mar, John Quackenbush
Published 2009-12-01

Investigating transcriptome-wide sex dimorphism by multi-level analysis of single-cell RNA sequencing data in ten mouse cell types

by Tianyuan Lu, Jessica C. Mar
Published 2020-11-01

Evaluating methods of inferring gene regulatory networks highlights their lack of performance for single cell gene expression data

by Shuonan Chen, Jessica C. Mar
Published 2018-06-01

Investigating skewness to understand gene expression heterogeneity in large patient cohorts

by Benjamin V. Church, Henry T. Williams, Jessica C. Mar
Published 2019-12-01

Identification of a novel subgroup of endometrial cancer patients with loss of thyroid hormone receptor beta expression and improved survival

by Daniel G. Piqué, John M. Greally, Jessica C. Mar
Published 2020-09-01

Protein-Protein interactions uncover candidate 'core genes' within omnigenic disease networks.

by Abhirami Ratnakumar, Nils Weinhold, Jessica C Mar, Nadeem Riaz
Published 2020-07-01

attract: A method for identifying core pathways that define cellular phenotypes.

by Jessica C Mar, Nicholas A Matigian, John Quackenbush, Christine A Wells
Published 2011-01-01

The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data

by Laurence de Torrenté, Samuel Zimmerman, Masako Suzuki, Maximilian Christopeit, John M. Greally, Jessica C. Mar
Published 2020-12-01

pathVar: a new method for pathway-based interpretation of gene expression variability

by Laurence de Torrente, Samuel Zimmerman, Deanne Taylor, Yu Hasegawa, Christine A. Wells, Jessica C. Mar
Published 2017-05-01

Variability of Gene Expression Identifies Transcriptional Regulators of Early Human Embryonic Development.

by Yu Hasegawa, Deanne Taylor, Dmitry A Ovchinnikov, Ernst J Wolvetang, Laurence de Torrenté, Jessica C Mar
Published 2015-08-01

Single-Cell Gene Expression Profiles Define Self-Renewing, Pluripotent, and Lineage Primed States of Human Pluripotent Stem Cells

by Shelley R. Hough, Matthew Thornton, Elizabeth Mason, Jessica C. Mar, Christine A. Wells, Martin F. Pera
Published 2014-06-01

Single-cell analysis of transcriptome and DNA methylome in human oocyte maturation.

by Bo Yu, Naresh Doni Jayavelu, Stephanie L Battle, Jessica C Mar, Timothy Schimmel, Jacques Cohen, R David Hawkins
Published 2020-01-01

Aneuvis: web-based exploration of numerical chromosomal variation in single cells

by Daniel G. Piqué, Grasiella A. Andriani, Elaine Maggi, Samuel E. Zimmerman, John M. Greally, Cristina Montagna, Jessica C. Mar
Published 2019-06-01

Gene Expression Variability as a Unifying Element of the Pluripotency Network

by Elizabeth A. Mason, Jessica C. Mar, Andrew L. Laslett, Martin F. Pera, John Quackenbush, Ernst Wolvetang, Christine A. Wells
Published 2014-08-01

Variance of gene expression identifies altered network constraints in neurological disease.

by Jessica C Mar, Nicholas A Matigian, Alan Mackay-Sim, George D Mellick, Carolyn M Sue, Peter A Silburn, John J McGrath, John Quackenbush, Christine A Wells
Published 2011-08-01

Application of Gene Expression Trajectories Initiated from ErbB Receptor Activation Highlights the Dynamics of Divergent Promoter Usage.

by Daniel Carbajo, Shigeyuki Magi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Erik Arner, Alistair R R Forrest, Piero Carninci, Yoshihide Hayashizaki, Carsten O Daub, FANTOM consortium, Mariko Okada-Hatakeyama, Jessica C Mar
Published 2015-01-01

Therapeutic implications of GIPC1 silencing in cancer.

by Thomas W Chittenden, Jane Pak, Renee Rubio, Hailing Cheng, Kristina Holton, Niall Prendergast, Vladimir Glinskii, Yi Cai, Aedin Culhane, Stefan Bentink, Mathew Schwede, Jessica C Mar, Eleanor A Howe, Martin Aryee, Razvan Sultana, Anthony A Lanahan, Jennifer M Taylor, Chris Holmes, William C Hahn, Jean J Zhao, J Dirk Iglehart, John Quackenbush
Published 2010-12-01

Viral perturbations of host networks reflect disease etiology.

by Natali Gulbahce, Han Yan, Amélie Dricot, Megha Padi, Danielle Byrdsong, Rachel Franchi, Deok-Sun Lee, Orit Rozenblatt-Rosen, Jessica C Mar, Michael A Calderwood, Amy Baldwin, Bo Zhao, Balaji Santhanam, Pascal Braun, Nicolas Simonis, Kyung-Won Huh, Karin Hellner, Miranda Grace, Alyce Chen, Renee Rubio, Jarrod A Marto, Nicholas A Christakis, Elliott Kieff, Frederick P Roth, Jennifer Roecklein-Canfield, James A Decaprio, Michael E Cusick, John Quackenbush, David E Hill, Karl Münger, Marc Vidal, Albert-László Barabási
Published 2012-01-01