An Assessment of Environmental Metabarcoding Protocols Aiming at Favoring Contemporary Biodiversity in Inventories of Deep-Sea Communities

by Miriam I. Brandt, Blandine Trouche, Nicolas Henry, Nicolas Henry, Cathy Liautard-Haag, Lois Maignien, Colomban de Vargas, Colomban de Vargas, Patrick Wincker, Patrick Wincker, Julie Poulain, Julie Poulain, Daniela Zeppilli, Sophie Arnaud-Haond
Published 2020-05-01

De novo sequencing of Astyanax mexicanus surface fish and Pachón cavefish transcriptomes reveals enrichment of mutations in cavefish putative eye genes.

by Hélène Hinaux, Julie Poulain, Corinne Da Silva, Céline Noirot, William R Jeffery, Didier Casane, Sylvie Rétaux
Published 2013-01-01

In silico survey of the mitochondrial protein uptake and maturation systems in the brown alga Ectocarpus siliculosus.

by Ludovic Delage, Catherine Leblanc, Pi Nyvall Collén, Bernhard Gschloessl, Marie-Pierre Oudot, Lieven Sterck, Julie Poulain, Jean-Marc Aury, J Mark Cock
Published 2011-01-01

RNA-Seq of early-infected poplar leaves by the rust pathogen Melampsora larici-populina uncovers PtSultr3;5, a fungal-induced host sulfate transporter.

by Benjamin Petre, Emmanuelle Morin, Emilie Tisserant, Stéphane Hacquard, Corinne Da Silva, Julie Poulain, Christine Delaruelle, Francis Martin, Nicolas Rouhier, Annegret Kohler, Sébastien Duplessis
Published 2012-01-01

Author Correction: A framework for in situ molecular characterization of coral holobionts using nanopore sequencing

by Quentin Carradec, Julie Poulain, Emilie Boissin, Benjamin C. C. Hume, Christian R. Voolstra, Maren Ziegler, Stefan Engelen, Corinne Cruaud, Serge Planes, Patrick Wincker
Published 2021-01-01

An improved primer set and amplification protocol with increased specificity and sensitivity targeting the Symbiodinium ITS2 region

by Benjamin C.C. Hume, Maren Ziegler, Julie Poulain, Xavier Pochon, Sarah Romac, Emilie Boissin, Colomban de Vargas, Serge Planes, Patrick Wincker, Christian R. Voolstra
Published 2018-05-01

Metagenomes of the picoalga Bathycoccus from the Chile coastal upwelling.

by Daniel Vaulot, Cécile Lepère, Eve Toulza, Rodrigo De la Iglesia, Julie Poulain, Frédéric Gaboyer, Hervé Moreau, Klaas Vandepoele, Osvaldo Ulloa, Frederick Gavory, Gwenael Piganeau
Published 2012-01-01

Masculinization of the x chromosome in the pea aphid.

by Julie Jaquiéry, Claude Rispe, Denis Roze, Fabrice Legeai, Gaël Le Trionnaire, Solenn Stoeckel, Lucie Mieuzet, Corinne Da Silva, Julie Poulain, Nathalie Prunier-Leterme, Béatrice Ségurens, Denis Tagu, Jean-Christophe Simon
Published 2013-01-01

Evaluating sediment and water sampling methods for the estimation of deep-sea biodiversity using environmental DNA

by Miriam I. Brandt, Florence Pradillon, Blandine Trouche, Nicolas Henry, Cathy Liautard-Haag, Marie-Anne Cambon-Bonavita, Valérie Cueff-Gauchard, Patrick Wincker, Caroline Belser, Julie Poulain, Sophie Arnaud-Haond, Daniela Zeppilli
Published 2021-04-01

Candidate chemosensory Genes in Female Antennae of the Noctuid Moth Spodoptera littoralis

by Emmanuelle Jacquin-Joly, Fabrice Legeai, Nicolas Montagné, Christelle Monsempes, Marie-Christine François, Julie Poulain, Frédéric Gavory, William B. Walker III, Bill S. Hansson, Mattias C. Larsson
Published 2012-01-01

Mechanisms of endoderm formation in a cartilaginous fish reveal ancestral and homoplastic traits in jawed vertebrates

by Benoit G. Godard, Marion Coolen, Sophie Le Panse, Aurélie Gombault, Susana Ferreiro-Galve, Laurent Laguerre, Ronan Lagadec, Patrick Wincker, Julie Poulain, Corinne Da Silva, Shigehiro Kuraku, Wilfrid Carre, Agnès Boutet, Sylvie Mazan
Published 2014-10-01

Nanoplanktonic diatoms are globally overlooked but play a role in spring blooms and carbon export

by Karine Leblanc, Bernard Quéguiner, Frédéric Diaz, Véronique Cornet, Mónica Michel-Rodriguez, Xavier Durrieu de Madron, Chris Bowler, Shruti Malviya, Melilotus Thyssen, Gérald Grégori, Mathieu Rembauville, Olivier Grosso, Julie Poulain, Colomban de Vargas, Mireille Pujo-Pay, Pascal Conan
Published 2018-03-01

Comparative analysis of Acinetobacters: three genomes for three lifestyles.

by David Vallenet, Patrice Nordmann, Valérie Barbe, Laurent Poirel, Sophie Mangenot, Elodie Bataille, Carole Dossat, Shahinaz Gas, Annett Kreimeyer, Patricia Lenoble, Sophie Oztas, Julie Poulain, Béatrice Segurens, Catherine Robert, Chantal Abergel, Jean-Michel Claverie, Didier Raoult, Claudine Médigue, Jean Weissenbach, Stéphane Cruveiller
Published 2008-03-01

The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences.

by Olivier Arnaiz, Nathalie Mathy, Céline Baudry, Sophie Malinsky, Jean-Marc Aury, Cyril Denby Wilkes, Olivier Garnier, Karine Labadie, Benjamin E Lauderdale, Anne Le Mouël, Antoine Marmignon, Mariusz Nowacki, Julie Poulain, Malgorzata Prajer, Patrick Wincker, Eric Meyer, Sandra Duharcourt, Laurent Duret, Mireille Bétermier, Linda Sperling
Published 2012-01-01

Gene flow contributes to diversification of the major fungal pathogen Candida albicans

by Jeanne Ropars, Corinne Maufrais, Dorothée Diogo, Marina Marcet-Houben, Aurélie Perin, Natacha Sertour, Kevin Mosca, Emmanuelle Permal, Guillaume Laval, Christiane Bouchier, Laurence Ma, Katja Schwartz, Kerstin Voelz, Robin C. May, Julie Poulain, Christophe Battail, Patrick Wincker, Andrew M. Borman, Anuradha Chowdhary, Shangrong Fan, Soo Hyun Kim, Patrice Le Pape, Orazio Romeo, Jong Hee Shin, Toni Gabaldon, Gavin Sherlock, Marie-Elisabeth Bougnoux, Christophe d’Enfert
Published 2018-06-01

The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean.

by Serge Planes, Denis Allemand, Sylvain Agostini, Bernard Banaigs, Emilie Boissin, Emmanuel Boss, Guillaume Bourdin, Chris Bowler, Eric Douville, J Michel Flores, Didier Forcioli, Paola Furla, Pierre E Galand, Jean-François Ghiglione, Eric Gilson, Fabien Lombard, Clémentine Moulin, Stephane Pesant, Julie Poulain, Stéphanie Reynaud, Sarah Romac, Matthew B Sullivan, Shinichi Sunagawa, Olivier P Thomas, Romain Troublé, Colomban de Vargas, Rebecca Vega Thurber, Christian R Voolstra, Patrick Wincker, Didier Zoccola, Tara Pacific Consortium
Published 2019-09-01

The streamlined genome of Phytomonas spp. relative to human pathogenic kinetoplastids reveals a parasite tailored for plants.

by Betina M Porcel, France Denoeud, Fred Opperdoes, Benjamin Noel, Mohammed-Amine Madoui, Tansy C Hammarton, Mark C Field, Corinne Da Silva, Arnaud Couloux, Julie Poulain, Michael Katinka, Kamel Jabbari, Jean-Marc Aury, David A Campbell, Roxana Cintron, Nicholas J Dickens, Roberto Docampo, Nancy R Sturm, V Lila Koumandou, Sandrine Fabre, Pavel Flegontov, Julius Lukeš, Shulamit Michaeli, Jeremy C Mottram, Balázs Szöőr, Dan Zilberstein, Frédéric Bringaud, Patrick Wincker, Michel Dollet
Published 2014-02-01

Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans

by Yoann Seeleuthner, Samuel Mondy, Vincent Lombard, Quentin Carradec, Eric Pelletier, Marc Wessner, Jade Leconte, Jean-François Mangot, Julie Poulain, Karine Labadie, Ramiro Logares, Shinichi Sunagawa, Véronique de Berardinis, Marcel Salanoubat, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Stephane Pesant, Nicole Poulton, Ramunas Stepanauskas, Peer Bork, Chris Bowler, Pascal Hingamp, Matthew B. Sullivan, Daniele Iudicone, Ramon Massana, Jean-Marc Aury, Bernard Henrissat, Eric Karsenti, Olivier Jaillon, Mike Sieracki, Colomban de Vargas, Patrick Wincker
Published 2018-01-01

A global ocean atlas of eukaryotic genes

by Quentin Carradec, Eric Pelletier, Corinne Da Silva, Adriana Alberti, Yoann Seeleuthner, Romain Blanc-Mathieu, Gipsi Lima-Mendez, Fabio Rocha, Leila Tirichine, Karine Labadie, Amos Kirilovsky, Alexis Bertrand, Stefan Engelen, Mohammed-Amin Madoui, Raphaël Méheust, Julie Poulain, Sarah Romac, Daniel J. Richter, Genki Yoshikawa, Céline Dimier, Stefanie Kandels-Lewis, Marc Picheral, Sarah Searson, Tara Oceans Coordinators, Olivier Jaillon, Jean-Marc Aury, Eric Karsenti, Matthew B. Sullivan, Shinichi Sunagawa, Peer Bork, Fabrice Not, Pascal Hingamp, Jeroen Raes, Lionel Guidi, Hiroyuki Ogata, Colomban de Vargas, Daniele Iudicone, Chris Bowler, Patrick Wincker
Published 2018-01-01

Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea.

by Joelle Amselem, Christina A Cuomo, Jan A L van Kan, Muriel Viaud, Ernesto P Benito, Arnaud Couloux, Pedro M Coutinho, Ronald P de Vries, Paul S Dyer, Sabine Fillinger, Elisabeth Fournier, Lilian Gout, Matthias Hahn, Linda Kohn, Nicolas Lapalu, Kim M Plummer, Jean-Marc Pradier, Emmanuel Quévillon, Amir Sharon, Adeline Simon, Arjen ten Have, Bettina Tudzynski, Paul Tudzynski, Patrick Wincker, Marion Andrew, Véronique Anthouard, Ross E Beever, Rolland Beffa, Isabelle Benoit, Ourdia Bouzid, Baptiste Brault, Zehua Chen, Mathias Choquer, Jérome Collémare, Pascale Cotton, Etienne G Danchin, Corinne Da Silva, Angélique Gautier, Corinne Giraud, Tatiana Giraud, Celedonio Gonzalez, Sandrine Grossetete, Ulrich Güldener, Bernard Henrissat, Barbara J Howlett, Chinnappa Kodira, Matthias Kretschmer, Anne Lappartient, Michaela Leroch, Caroline Levis, Evan Mauceli, Cécile Neuvéglise, Birgitt Oeser, Matthew Pearson, Julie Poulain, Nathalie Poussereau, Hadi Quesneville, Christine Rascle, Julia Schumacher, Béatrice Ségurens, Adrienne Sexton, Evelyn Silva, Catherine Sirven, Darren M Soanes, Nicholas J Talbot, Matt Templeton, Chandri Yandava, Oded Yarden, Qiandong Zeng, Jeffrey A Rollins, Marc-Henri Lebrun, Marty Dickman
Published 2011-08-01