Detecting operons in bacterial genomes via visual representation learning

by Rida Assaf, Fangfang Xia, Rick Stevens
Published 2021-01-01

Identifying genomic islands with deep neural networks

by Rida Assaf, Fangfang Xia, Rick Stevens
Published 2021-06-01

AI Meets Exascale Computing: Advancing Cancer Research With Large-Scale High Performance Computing

by Tanmoy Bhattacharya, Thomas Brettin, James H. Doroshow, Yvonne A. Evrard, Emily J. Greenspan, Amy L. Gryshuk, Thuc T. Hoang, Carolyn B. Vea Lauzon, Dwight Nissley, Lynne Penberthy, Eric Stahlberg, Rick Stevens, Rick Stevens, Fred Streitz, Georgia Tourassi, Fangfang Xia, George Zaki
Published 2019-10-01

Computing and Applying Atomic Regulons to Understand Gene Expression and Regulation

by José Pedro Faria, José Pedro Faria, José Pedro Faria, James J Davis, James J Davis, Janaka N Edirisinghe, Janaka N Edirisinghe, Ronald C Taylor, Pamela B Weisenhorn, Robert D Olson, Robert D Olson, Rick Stevens, Rick Stevens, Miguel Rocha, Isabel Rocha, Aaron A Best, Matthew DeJongh, Nathan L Tintle, Bruce Parrelo, Ross Overbeek, Christopher Scott Henry, Christopher Scott Henry
Published 2016-11-01

CANDLE/Supervisor: a workflow framework for machine learning applied to cancer research

by Justin M. Wozniak, Rajeev Jain, Prasanna Balaprakash, Jonathan Ozik, Nicholson T. Collier, John Bauer, Fangfang Xia, Thomas Brettin, Rick Stevens, Jamaludin Mohd-Yusof, Cristina Garcia Cardona, Brian Van Essen, Matthew Baughman
Published 2018-12-01

The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes.

by Florent E Angly, Dana Willner, Alejandra Prieto-Davó, Robert A Edwards, Robert Schmieder, Rebecca Vega-Thurber, Dionysios A Antonopoulos, Katie Barott, Matthew T Cottrell, Christelle Desnues, Elizabeth A Dinsdale, Mike Furlan, Matthew Haynes, Matthew R Henn, Yongfei Hu, David L Kirchman, Tracey McDole, John D McPherson, Folker Meyer, R Michael Miller, Egbert Mundt, Robert K Naviaux, Beltran Rodriguez-Mueller, Rick Stevens, Linda Wegley, Lixin Zhang, Baoli Zhu, Forest Rohwer
Published 2009-12-01

Genomic encyclopedia of bacteria and archaea: sequencing a myriad of type strains.

by Nikos C Kyrpides, Philip Hugenholtz, Jonathan A Eisen, Tanja Woyke, Markus Göker, Charles T Parker, Rudolf Amann, Brian J Beck, Patrick S G Chain, Jongsik Chun, Rita R Colwell, Antoine Danchin, Peter Dawyndt, Tom Dedeurwaerdere, Edward F DeLong, John C Detter, Paul De Vos, Timothy J Donohue, Xiu-Zhu Dong, Dusko S Ehrlich, Claire Fraser, Richard Gibbs, Jack Gilbert, Paul Gilna, Frank Oliver Glöckner, Janet K Jansson, Jay D Keasling, Rob Knight, David Labeda, Alla Lapidus, Jung-Sook Lee, Wen-Jun Li, Juncai Ma, Victor Markowitz, Edward R B Moore, Mark Morrison, Folker Meyer, Karen E Nelson, Moriya Ohkuma, Christos A Ouzounis, Norman Pace, Julian Parkhill, Nan Qin, Ramon Rossello-Mora, Johannes Sikorski, David Smith, Mitch Sogin, Rick Stevens, Uli Stingl, Ken-Ichiro Suzuki, Dorothea Taylor, Jim M Tiedje, Brian Tindall, Michael Wagner, George Weinstock, Jean Weissenbach, Owen White, Jun Wang, Lixin Zhang, Yu-Guang Zhou, Dawn Field, William B Whitman, George M Garrity, Hans-Peter Klenk
Published 2014-08-01